Paracoccus homiensis: ACLISE_08470
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Entry
ACLISE_08470 CDS
T11345
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
phoi Paracoccus homiensis
Pathway
phoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACLISE_08470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phoi03019
]
ACLISE_08470
Enzymes [BR:
phoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACLISE_08470
Messenger RNA biogenesis [BR:
phoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACLISE_08470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
NAT10_TcmA_helicase
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
XMR60182
LinkDB
All DBs
Position
1658425..1659657
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AA seq
410 aa
AA seq
DB search
MGIDARINANIAAMGLNKPTPIQSQAIPSVVEGRDVLGLAQTGTGKTAAFGLPMLTRLIK
FGKKPDPKTCRALILAPTRELATQIATNIDAYAEGTPIRSYRVVGGASINVQTERLSRGV
DVLIATPGRLIDLIERRAVDLSQTTYLVLDEADQMLDIGFIHALRKIARILPRDRQTLLF
SATMPKLMSELADTYLTDPIKVAVNPPGQAAKKIDQGVHFVNQGDKATLLAEYLSKHPGE
LAMVFGRTKHGCEKLSKLLEKWGFAVAAIHGNKSQGQRERALQAFRDGETQVLVATDVAA
RGLDIPQVAHVYNYDLPNVPENYVHRIGRTGRAGRDGNAIAFCAPAEVGELRAIERAMKS
SIRVVGGEAPTGPIPSGQPSRGRGKPANTGGNKRPTRRPSRKPQGSRVKS
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgggcatcgatgcgcgcatcaacgccaatatcgccgcgatgggcctgaacaagccgacg
ccgatccaaagccaggcgatcccctcggtcgtcgaggggcgcgacgtgctgggccttgcg
cagaccggcaccggcaagacggcggccttcggcttgccgatgctgacccgcctgatcaag
ttcggcaagaagcccgaccccaagacctgtcgtgcgctgatccttgcgccgacgcgcgaa
ctggccacccagatcgccaccaatatcgacgcctatgccgaaggcacgccgatccggtcc
taccgcgtcgtcggcggcgcctcgatcaatgtgcagaccgaacgcctgtcgcgcggggtc
gatgtgctgatcgccacgccgggccgcctgatcgacctgatcgagcgtcgcgccgtggac
ctgtcgcagaccacctatctggtgctggacgaggccgaccagatgctggacatcggcttt
atccacgcgctgcgcaagatcgcaaggatcctgccgcgcgatcgccagacgctgctgttc
tcggcgaccatgccgaaactgatgtcggaactggccgatacctatctgaccgatcccatc
aaggtcgcggtgaaccctccgggtcaggcggccaagaagatcgatcagggcgtgcatttc
gtcaatcagggcgacaaggcgacgctgctggccgaatacctgtccaaacatcccggcgaa
ttggcgatggtctttggccgcaccaagcatggctgcgaaaagctgtcgaagctgttggaa
aaatggggcttcgcggttgcggccatccacggcaacaaaagccagggccaacgcgaacga
gcgctgcaggcgttccgcgatggcgaaacgcaggtgctggtcgcgaccgacgtggccgcg
cggggtctggatattccgcaggtggcgcatgtctacaactatgacctgccgaacgtgccg
gaaaactatgtccaccggatcggtcggaccggccgcgccggtcgcgacggcaatgccatc
gccttctgcgcgcctgccgaggtcggcgagttgcgtgcgatcgaacgcgcgatgaaatcc
tcgatccgcgtggtcggtggcgaagcgcccaccggccccatcccttcgggtcagccgtcg
cgcggccggggcaaacccgccaataccggcggcaacaaacggcccacacgccgcccctcg
cgcaagccgcagggaagccgcgtcaaaagctag
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