Paracoccus homiensis: ACLISE_13525
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Entry
ACLISE_13525 CDS
T11345
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
phoi Paracoccus homiensis
Pathway
phoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACLISE_13525 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phoi03021
]
ACLISE_13525 (rho)
03019 Messenger RNA biogenesis [BR:
phoi03019
]
ACLISE_13525 (rho)
Transcription machinery [BR:
phoi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACLISE_13525 (rho)
Messenger RNA biogenesis [BR:
phoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACLISE_13525 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
NACHT
AAA_25
AAA_22
OB_RNB
Fungal_virus_P2_C
AAA
Spore_III_AA
Lactamase_B
TcdB_toxin_midN
Motif
Other DBs
NCBI-ProteinID:
XMR58814
LinkDB
All DBs
Position
2684679..2685950
Genome browser
AA seq
423 aa
AA seq
DB search
MSEERLNLSDLKAKSPADLLSMAEEWEVENASTMRKGEMMFSILKEHAEEGWDIGGEGVL
EVVQDGFGFLRSTEANYLPGPDDIYVSPDMIRQHALRTGDTVEGVIRAPGENERYFALTK
VERINFEDPDKARHKVAFDNLTPLYPNDRLNMEIEDPTIKDRSARIIDLVAPIGKGQRSL
IVAPPRTGKTVLLQNIAHSIARNHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEP
ASRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTTVPSSGKVLTGGVDANALQ
RPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVF
PAMDILKSGTRKEDLLVEAKDLQKTYLLRRILNPMGTTDAIEFLISKLKQTKTNSEFFDS
MNA
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagagcgcctcaatctttccgatctgaaggcaaaaagtcccgccgatctgctg
tccatggcagaagaatgggaagtcgagaacgcatcgaccatgcgcaagggcgagatgatg
ttctcgatcctgaaagagcatgccgaagagggctgggatatcggcggcgagggcgttctt
gaggtcgttcaggacggtttcggctttctgcgctcgaccgaggcgaactatctgcccggt
cccgacgacatctacgtcagcccggacatgatccgtcagcacgcgctgcgcaccggtgat
acggtcgagggtgtcatccgcgcacctggggaaaacgaacgttatttcgccttgaccaag
gtcgagcggatcaatttcgaagaccccgacaaggcccgccacaaggtcgcgttcgacaac
ctgaccccgctttatcccaatgatcgcctgaacatggagatcgaggatccaacgatcaaa
gatcgcagcgcgcggatcatcgatctggtcgcgccgatcggcaaggggcagcgttcgttg
atcgtggcgccgccgcgcacgggtaaaaccgtcctgctgcagaatatcgcccattcgatc
gcccggaatcacccggaatgctatctgatcgtccttctgatcgacgaacgcccggaggaa
gtgaccgacatgcagcgttcggtgaaaggcgaggtgatttcctcgactttcgacgagcct
gccagccggcacgtcgctgtcagcgaaatggtgatcgaaaaagccaaacgactggtcgag
cataaacgagatgttgtgatcttgctggattcgatcacaagacttggccgcgcctataac
acgaccgtgcccagctcgggcaaggttctgacgggcggcgtcgatgcgaatgcgctgcag
cggcccaagcgcttcttcggtgcggcacggaatatcgaagagggtggttcgctgacgatc
atcgcaaccgcgctgatcgacaccggttcgcggatggatgaggtgatctttgaggaattc
aagggcaccggtaacagcgagatcgtcctggaccgcaaggtggccgacaagcgcgtcttc
ccggccatggacatcctgaaatccggcacccggaaagaggatcttctggtcgaggcgaag
gatctgcaaaagacctatctgctgcgccggatcctgaacccgatgggcaccaccgacgcg
atcgagttcctgatctcgaagctgaaacagaccaagaccaattccgagttcttcgattca
atgaacgcctga
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