Pseudomonas hormoni: KJF94_00040
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Entry
KJF94_00040 CDS
T09556
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
phom
Pseudomonas hormoni
Pathway
phom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KJF94_00040 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phom03400
]
KJF94_00040 (recD)
Enzymes [BR:
phom01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KJF94_00040 (recD)
DNA repair and recombination proteins [BR:
phom03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KJF94_00040 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
Helicase_RecD
SH3_13
AAA_22
Viral_helicase1
UvrD-helicase
AAA_17
SLFN-g3_helicase
AAA_16
T2SSE
AAA_28
PhoH
NTPase_1
TraI_hel_assoc_N
SAS4
nSTAND3
AAA_5
Motif
Other DBs
NCBI-ProteinID:
QVW24013
LinkDB
All DBs
Position
13033..15141
Genome browser
AA seq
702 aa
AA seq
DB search
MTRTFADLLPTPLAAGSLASLAPLSRADDLLLLLTRWVERGWLRALDKAFVAFLHELAPD
GDPLVLLAAALTSHQLGHGHVCLDLFETLKAPDFALSLPPEGDLQSGAMLLPSQLLETLD
GAHWCKVLASSRLVALAADSSETAQQRPLVLSGKRLYLRRYWAYERRIDNALRLRLAEHE
STPNDLPQRLTGLFGPARSGEVIDWQKLACALATRSAFSIVTGGPGTGKTTTVVRLLALL
QAPAVEAGKPLRIRLAAPTGKAAARLTESISQQVRTLEVAEAVREKIPSDVTTVHRLLGS
RPGTRHFRHHAGNRLPLDVLVVDEASMIDLEMMANLLDAMPAHARLVLLGDKDQLASVEA
GAVLGDLCRDAEAGWYSPQTCQWLEAVSGENLETSGLQEDTHGTHPLAQQVVMLRHSRRF
GEGSGIGQLARWVNQQQPEEARKLLAAESHDDVFSLPLKDEHDRALERLLLEGHGDGPQG
YRHYLSLLRNRRPSLDSTLDDPRWTDWARDVLQAFDAFQLLCAVRKGPWGVEGLNQRVTD
ALLKARLIDSNQQWYEGRPVLMTRNDYGLGLMNGDIGIALKLPEREGSDAGRHVLRVAFP
RNDGQGGVRFVLPSRLNDVETVYAMTVHKSQGSEFAHTALILPDALNPVLTKELIYTGIT
RAKHWFTLIEPRTGVFEEAVRRKVKRLSGLMLELEEAVSPGD
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgacccgcaccttcgccgatttgttgcccacaccgttggcagccggaagcctggcgagt
ctggcgccgttgagtcgcgccgatgatttgctgttgttgctcacgcgctgggtcgagcgc
ggctggttgcgagcgctggacaaagccttcgttgcctttttgcacgagcttgctcccgac
ggtgatccgctggtgctgctggcggcggcgttgaccagtcatcaactgggtcacggtcac
gtctgcctggatctgttcgagacgctcaaggcgccggatttcgccctgtcgttgccaccg
gaaggcgacctgcaaagtggcgcgatgctgctgccttcgcaattgcttgagacgctggac
ggcgcccattggtgcaaggtcctggcctccagccgtctggttgcattggcggccgatagc
agcgaaacggcgcagcaaaggccgttggtgttatcgggaaagcgcctgtacctgcgccgt
tattgggcgtacgagcgacgtatcgataacgcgctgcgcctacgcttggcggaacacgaa
tccacaccgaatgacttgccccagcgcctcaccggtctgttcggtccggctcggtccggt
gaggtgatcgactggcagaaactcgcgtgtgccttggcgacccgcagtgcattcagcatc
gtcaccggcggtcccgggaccggcaagaccaccacggtcgtgcgtttgctggcgctgttg
caggcaccggcggtggaggctggcaaaccactgcgcatccgtctcgccgcccccaccggt
aaagcggcggcacggctgacggagtccatcagccagcaagtccggacgctggaagtggcc
gaggccgtgcgagaaaaaattccgtcagacgtcaccaccgtgcaccgcctgctcggcagc
cgtcccggaacccgacactttcggcaccacgccggtaatcgtttgccgctggatgttctg
gtggtcgacgaagcctcgatgatcgacctggagatgatggccaatctgctcgacgcgatg
ccggcccatgcccgactggtgctgctcggtgacaaggatcaactggcatcggtggaagcc
ggcgccgtgctgggcgatttgtgtcgcgacgccgaggcaggttggtacagcccgcagacg
tgccagtggctggaggcggtcagtggtgaaaacctcgagaccagtggtttgcaggaagac
acccacgggactcatccgctggcccagcaggtcgtgatgctgcgccactcgcgccggttc
ggcgagggcagcggcattggtcaactggctcgctgggtcaatcagcaacaaccggaagaa
gctcgcaaattgttggcggctgaaagccacgatgatgtgttttccctgcctctcaaagat
gagcacgacagggcactggagcgcttgttgctcgaaggccatggtgatgggccgcaaggg
tatcggcattacctgagcctgctgcgcaatcggcgaccgtcgctcgacagcaccctcgat
gatccgcgttggaccgattgggctcgcgacgtgctgcaggcctttgatgccttccagttg
ctgtgcgccgtgcgcaaggggccatggggcgtggaaggtctgaatcagcgagtgactgac
gcgctgctcaaggcccgactgatcgacagcaaccagcagtggtacgaaggtcggccagtg
ctgatgactcgcaacgactatggcctgggcttgatgaacggcgacatcggcattgctctc
aagctgccggagcgcgagggttccgacgcgggacgccacgtgctgcgcgtggccttcccg
cgtaacgacggccagggcggcgtgcgctttgtcctgccgagccggctgaatgatgtcgaa
acggtgtacgccatgaccgtgcacaagtcccagggctccgagttcgcccatacggcgctg
attttgccggacgccctgaacccggttctgaccaaagagctcatctataccggcatcacc
cgcgccaagcactggtttaccttgatcgaacctcgaaccggcgtgtttgaagaggcggtg
cgacgcaaggtcaagcggctgagcgggctgatgctggaattggaagaggccgtgtcgccg
ggggattga
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