Pseudomonas hormoni: KJF94_00475
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Entry
KJF94_00475 CDS
T09556
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
phom
Pseudomonas hormoni
Pathway
phom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJF94_00475 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phom03019
]
KJF94_00475 (pnp)
03016 Transfer RNA biogenesis [BR:
phom03016
]
KJF94_00475 (pnp)
Enzymes [BR:
phom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KJF94_00475 (pnp)
Messenger RNA biogenesis [BR:
phom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KJF94_00475 (pnp)
Transfer RNA biogenesis [BR:
phom03016
]
Prokaryotic type
tRNA degradation factors
KJF94_00475 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
KH_N4BP1_2nd
OB_RRP5_4th
TraK_C
S1_2
Motif
Other DBs
NCBI-ProteinID:
QVW24094
LinkDB
All DBs
Position
109154..111259
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAPQPEA
TALLGAIRAEFGDAISQAYTITIKADRYARLGELKDQVVAKLSGEEGQPSSSEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSIAAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccagttcggtcagtcgaccgttaccctcgagactggc
cgcatcgcccgtcaggcctccggcgcagtattggtcaccgttgacgacgacgtcagcgta
ttggtgaccgtagtcggtgccaagcaagccgatccaggcaagggcttcttccctctgtcc
gttcactaccaggaaaagacttacgctgccggtaagattcctggcggtttcttcaagcgc
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttcccggaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtttccacc
agcaagaagaccgatccggacatcgctgcgatgatcggtacctcggctgcgctggccatc
tccggcattcctttcgatggcccgatcggcgctgcccgcgttgcgttccacgaaagcacc
ggctacctgctgaacccgacttacgaacaacagaaagcttcgagcctggacatggtcgtt
gccggtacttcggaagccgttctgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgcggtactgtttgctcacgacgagttccaggttgtgatcaacgccgtt
aaagaactggctgccgaagctgccaagccgacctggacctgggctccacagccagaagcc
actgctctgctgggcgctatccgtgccgagttcggcgacgcgatttcccaggcttacacc
atcaccatcaaggccgaccgttacgctcgcctgggtgagctgaaagaccaggttgttgcc
aagctgtccggtgaagaaggccagccttcttccagcgaagtcaaagcagcattcggcgaa
atcgaataccgcactgttcgcgaaaacatcgtaaacggcaagccacgtatcgacggccgc
gacaccaagaccgtacgtcctttgaacatcgaagtcggtgttctgcctaaaacccacggt
tcggcactgttcacccgtggcgaaacccaggctctggttgttgcaacactgggcaccgcc
cgtgacgcacaactgctggacaccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttccctccgttctcggtaggtgagtgtggtcgcatgggtggcgctggtcgtcgc
gaaatcggtcacggccgtctggcccgtcgttcgattgcagccatgctgcctgccgccgac
gtgttcccgtacaccatccgtgtagtgtcggaaatcaccgagtccaacggttcgagctcc
atggcttcggtctgcggcgcttccctggccctgatggatgccggcgttccgatgaaggca
ccggttgccggtatcgccatgggtctggttaaagaaggcgagaagttcgccatcctgacc
gacatcctgggtgacgaagaccacctcggcgacatggacttcaaagtagccggtaccgcc
aaaggtgttaccgcgctgcagatggacatcaagatcaaaggcatcaccgaagaaatcatg
gagatcgctctgggccaagccctggaagcgcgcctgaacatcctcggtcagatgaaccag
atcattggtcagtcgcgtaccgaactgtcggaaaacgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgtcatcggtaaaggcggcgcgaccattcgtgcgatc
tgtgaagagaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagcggctgaagcagcacgtcagcgcgttctgggcatcaccgctgaagct
gaaatcggcaagatctacgtcggcaaggttgagcgcatcgtcgacttcggcgcattcgtc
aacatcctgccgggcaaggacggtctggttcacatctcgatgctgagcgacgctcgcgtt
gagaaagtgaccgacatcctgaaagaaggtcaggaagtggaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaagacgtcgcagcagccaaggcttcgggc
gtttaa
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