Pseudomonas hormoni: KJF94_03895
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Entry
KJF94_03895 CDS
T09556
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
phom
Pseudomonas hormoni
Brite
KEGG Orthology (KO) [BR:
phom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phom03016
]
KJF94_03895 (rnd)
Enzymes [BR:
phom01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KJF94_03895 (rnd)
Transfer RNA biogenesis [BR:
phom03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KJF94_03895 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QVW24734
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All DBs
Position
842974..844107
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AA seq
377 aa
AA seq
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MAIDIHWIRDNDSLGRFCAEWQQLPYVALDTEFMRVDTFYPIAGLLQIGDGVRAYLIDPL
TIDNWQPLAALLENPAVVKVVHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGFSMGY
SRLVQEVLGIDLPKGETRSDWLQRPLSDTQISYAAEDALHLAEVFVQLRPKLSDDKYAWV
LEDGAELVANLRREVDPYEVYREAKLAWKLSRAQLAVLRELCAWREREARARDLPRNRII
REHSLWPLARTQPDNLGALAKIEDMHPRTVRQDGEFLLDLIKRSGSVSPDQWPPAVPEPL
PVDAAALIKQLRALGQAEAERLNIAPELMLRKKTLEALLKSGFPNGPYQLPDSLRGWRRE
LMGQALLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacaacgatagcctcggccggttttgcgccgag
tggcagcagctgccctacgttgccctcgacaccgaattcatgcgggtcgacaccttttat
ccgatcgctggcctgctgcagatcggcgatggcgtacgcgcttacctgattgacccgctg
accatcgacaactggcagcccctggccgcgttgctggaaaacccggccgtggtcaaagtc
gtgcatgcgtgcagcgaagacctcgaagtgttgctgcgcctgaccggcagcctgccggcg
ccgctgttcgatacccaactggccgccgcctacctgaaccttggtttctccatgggctat
tcgcggctggtgcaggaagtgctcggcatcgacctgcccaagggcgagacccgttccgac
tggctgcaacgtccgctgtccgacacccagatcagctacgccgctgaagacgccttgcac
ctcgcggaagttttcgtacagcttcgtccgaagctgtctgacgacaagtacgcctgggtc
ctggaagacggcgccgagctggtggccaacctgcgtcgtgaagttgatccgtacgaggtc
tatcgcgaagccaaactggcctggaagctctcccgtgcccaactcgccgtgctgcgtgaa
ctctgcgcctggcgcgaacgcgaagcccgcgcccgtgacttgccgcgcaatcgcatcatc
cgtgaacattccctgtggccgctggcgcggacgcaaccggacaacctcggcgcgctggcg
aaaatcgaagacatgcacccgcgtaccgtgcgtcaggacggcgaatttctgcttgatctg
atcaaacgctctggcagtgtgtccccagatcaatggccgcctgccgtgccggagccgttg
ccggtggatgctgctgcgctgatcaaacagttgcgtgcactcgggcaggccgaagccgag
cgcctgaacatcgcgccggagctgatgctgcgcaagaaaaccctggaagcgctgctcaag
agcggcttccccaacggtccctaccaattgcctgattcgctgcgtggctggcgccgcgag
ttgatgggccaggcgctgctcgacagcctggccaccgccggagaacagccttga
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