Pseudomonas hormoni: KJF94_04110
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Entry
KJF94_04110 CDS
T09556
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
phom
Pseudomonas hormoni
Brite
KEGG Orthology (KO) [BR:
phom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phom03019
]
KJF94_04110 (hrpA)
Enzymes [BR:
phom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KJF94_04110 (hrpA)
Messenger RNA biogenesis [BR:
phom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KJF94_04110 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
AAA_25
NACHT
T2SSE
SLFN-g3_helicase
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
QVW24776
UniProt:
A0ABX8F0B9
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All DBs
Position
886536..890447
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPSIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEVKLAQWVTRMQASCDQVLARR
ASLPVIRYDDSLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAFERSERKSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLFS
EEDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDVDSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLSLNKEPADYPKLHKAVLSGLLSQIGQKTDEGDYLGARQRRFWIHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREALVRGEIQSKAKCLTANKQLLEQLDEL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRVNSQKDPQLLIMREEDVLARE
ASEVTALHYPDTLHIGDLELALSYHFEPNHPRDGVTLRVPAPLLPMLPSERLEWLVPGVI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRMTFAEGSLPLALGRELLRMTGARVSDEA
WAEAAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVE
AKVFAAVAEKTQQKIAGLSMTVYPALVEEAGTVKEGRFSTPAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGLTELGLMYRDMGRIDALVEDILLASLDSCILDGEDPLPRDGAGLAAL
AERKRGGWTEHAERLAKLTLEILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPMQWLKELPRYLKAIEQRFEKLGAQVQKDRVWSGELSGLWSQYQTRASKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLNKQWTQVEP
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgaatcgccttccatcgacaaactgctgaaaaacctcgatcacgccatgctc
gccgaccgccaccggctgcggcggcagttgcttgagctgcgcaagaagcccgacgaagtc
aagctggcccagtgggtgacgcgtatgcaggcgtcctgtgatcaggtgttggcgcggcgt
gccagcctgccggtgattcgttacgacgacagcctgccgatcgccgccaagcgcgacgaa
atcaaggaagcgctgctcaagcatcaagtgctgatcatcgccggcgaaaccggctcgggt
aaaaccacccagctgccgaaaatctgcctggaaatcggtcgcggtcaacatggcctgatc
ggccacactcagccacgtcgaattgcggcgcgcagcgtcgcgagccgggttgccgaagaa
ctggcgacgccgctgggcgcgctggtcggctatcaggtgcggttcgaggatcagagcgat
tccaacaccctgatcaaactgatgaccgacggcatcctgctggcggaaacccagaacgac
cgctacctcgagcgctacgacacgatcatcgtcgacgaagcccacgaacgtagcctgaac
atcgacttcctgctcggttacctgaaaaccctgctgccccgtcgtccggacctgaaagtc
atcatcacctcggcgaccattgacctggagcgcttctccaagcatttcgacgatgcgccg
atcgttgaggtctccggccgcacttttccggtggaaacctggtatcgcccgctgactctg
gagcaggacgaagagggcaaccgcgtcgaagacgacctgaccgtggatcaggcgatcctc
gccaccctcgacgaaatcgctgcgttcgaacgcagcgagcgcaagagccccggcgatgtg
ctggtgttcctgcccggcgagcgtgagattcgcgacgccgccgacatgttgcgcaaggcc
cagctcaagcacaccgaaatcctgccgctgtatgcgcggctatcgccggccgaacagcag
cggattttccagtcgcacccggggcgtcgcgtggtgctggcgaccaacgtcgcggaaacc
tcgttgaccgtgccgggcattcgttacgtgatcgacagcggtaccgcgcgcatcagccgc
tacagctaccgcgccaaggtccagcgcttgcccatcgaagccatttcccaggccagcgcc
aaccagcgtaaaggccgttgcgggcgggtcgagccgggcatctgtgtgcggctgttcagt
gaagaagactttatcggtcgcccggaatttaccgacccggaaatcctgcggaccaacctc
gcggcggtgatcctgcagatgctgcacctgcgcctcggcgagatcaccgatttcccgttt
atcgagccgccggacggcaaggccatcagcgacggtttcaacctgctgcaagagctgtcg
gcggtggatcgcaacagtcagctaaccccgctcggtcgccaattggcgcggctgccggtg
gacccgcgcatgggccgcatgctgctggaagcggcgaagctcggcagcttgcaggaagtg
ctgatcgtcgccagcgccatgtcgattcaagacccgcgtgaacggccgccggagcgtcaa
caagcggcggatcaggcccacgcccaatggaaagacgtggactcggacttcgccgggctg
gtcaatctgtggcgtggtttcgaagaacagcgtcaggcgttgacggccagtccgctgcgc
aactggtgccgcaagaatttcctgaattacctgcgtctgcgtgagtggcgcgactcgcac
cgtcagttgagcctgatctgccgcgacatgcagttgagcctcaacaaagagccggcggat
tacccgaagctgcacaaagccgtgctttcgggcctgctcagccagatcgggcagaaaacc
gatgaaggcgattacctcggcgcccgtcagcggcggttctggattcacccgtcatcgggg
ctcggcaagaagcgtccgcaatggctgatgaccgccgaactggtggaaaccaccaagctc
tatgcgcgcatggtcgccaagatcgacgccgactggatcgagccgctggccgggcacctg
atcaagaaaaaccacttcgaaccccattgggagaagaagcgcggacaggtcgtggcgttc
gagcagatcaccttgttcgggctgatcgtggtcggtcgccggccggtgcattacgggccg
gtcgatccggtggtctcccgcgagttgttcattcgtgaagcgctggtgcgtggcgagatt
cagtcaaaggccaaatgcctgacggccaacaaacaactgctggaacaactcgacgaactg
gaagccaaggcccgtcggcgtgacattctggccgacgaagaaaccctgttcgccttctac
gatgcgcgactgccggcggagattcaccagaccgcgaccttcgacagctggtatcgggtc
aacagccagaaagatccgcagttgttgatcatgcgcgaagaagacgtactggcccgcgag
gccagtgaagtcactgcgctgcattacccggacacgttgcatattggcgatctggaattg
gcgctcagttaccacttcgaaccgaaccatcctcgcgacggcgtgaccctgcgcgtgccg
gcgccgctgttgccgatgctgccgtcggagcgtctggaatggctggtgccgggtgtgatc
gaagccaagtgcatcgcgctggtgcgcaacctgcccaaggcgctgcgcaagaatttcgtg
ccggtgccggacttcgtcaaagccgcgttgcagcgcatgactttcgccgagggctctctg
cctctggcgctgggccgtgaactgctgcgcatgaccggtgcccgcgtcagtgatgaagcc
tgggctgaagcggcgcagcaagtcgaaagccatctgcgcatgaacctggaaatcgtcgac
ggccaaggcaagttccttggcgaagggcgtgatctggcggaactgaccgcacgattcgct
gaagcgagccaggctgctttggcggtgccgcagaccgcgaaaagccaacagccggtggag
gcgaaagtcttcgcggccgtggcggaaaagactcaacagaagattgccgggctgtcgatg
acggtgtatccggcgctggtggaagaggccggcacggtcaaggaagggcggttctcgacg
ccggccgaagccgagttccagcatcgccgcgcgttgcagcgcttgctgatgcaacagctg
gccgagccggcgaaattcctgcgcggcaagttgccggggctgaccgaactgggcctgatg
taccgcgacatggggcgcatcgacgcgctggtggaagacattctgctggccagcctcgac
agctgcatcctcgacggcgaagatccgctgccgcgcgatggcgccgggctggcggcgttg
gccgagcgcaagcgtggcggctggaccgagcacgccgagcggctggcgaagctgaccctg
gaaattctcaagctctggcacggcctgcaaaaacgcttcaagggcaagatcgatctggcg
caggccgtggcgctcaacgacatcaagcagcagctcagtcatctggtgtatccgggtttt
gtccgcgaaacgccgatgcagtggctcaaggaactgccccgttatctgaaagccatcgag
cagcgcttcgagaaactcggtgctcaggtgcagaaggatcgggtctggagcggtgagttg
tccggtctctggagccaataccagacccgcgccagcaagcacgcccaggaaggaaaacgc
gatccgcagcttgagctgtatcgctggtggctggaggaatacagggtttcgctgtttgcc
cagcaactggggaccaaagtgccgatttccgacaagcgcctgaacaagcaatggacccag
gtagaaccctag
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