Pseudomonas hormoni: KJF94_06290
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Entry
KJF94_06290 CDS
T09556
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
phom
Pseudomonas hormoni
Brite
KEGG Orthology (KO) [BR:
phom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phom03032
]
KJF94_06290 (topA)
03400 DNA repair and recombination proteins [BR:
phom03400
]
KJF94_06290 (topA)
Enzymes [BR:
phom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KJF94_06290 (topA)
DNA replication proteins [BR:
phom03032
]
Prokaryotic type
DNA Topoisomerases
KJF94_06290 (topA)
DNA repair and recombination proteins [BR:
phom03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KJF94_06290 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QVW25191
LinkDB
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Position
1367566..1370193
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AA seq
875 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLTPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKGAT
VRFDVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVTMARTYIEGEFGKKYLPETPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
TVGAGDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDAMKLIKLDPTQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPESGMRANQPVMT
DIPCTTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCDGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNATCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVMEIVPHKDEIDPKYHFLCEAPKKDPDGLPAVIRYSRKTK
EQYVQTEVDGKPTGWKAYYDGGKWTVEDKRPAAKA
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtat
ctgggtaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaagagccagccgccaagcgcggcaaggccgccgcgggtgaa
ggtccggtgctcacgccgaaagagaaagcgcgcaagcagctggtctcgcgcatgggtgtc
gatcccgatcatggctggaaagccaagtacgagatcctcccgggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaggatgctgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggtggtgacgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaaaaaggcgattcaggaagccttctccaag
ccgggcgagctggacatcgaccgtgtcaacgcccagcaggcgcgtcgtttcctcgaccgc
gtggtgggttacatggtttcgccgctgctgtgggccaagatcgcccgtggcctgtccgcc
ggtcgtgtgcaatcggttgccgtgaagctggtggtcgagcgtgaacgcgaaatccgtgcg
ttcaacccggaagagtactgggaagtccacgccgacctcggcaccgcgaagggtgccacc
gtgcgcttcgacgtcgctcgcgagaagggcgaagccttcaagccgctgaacgaagcccag
gccatggccgcgctggagaagctcaaggcttccagctacagcatcgtcaagcgcgaagac
aagccgaccagcagcaaaccgtcggcgccgttcatcacatccaccctgcaacaggctgcg
agcaaccgcctgggcttcggtgtgaagaaaaccatgatgatggcccagcgtttgtacgaa
gccggctacatcacgtatatgcgtaccgactccaccaacctctcggccgatgccgtgacg
atggcgcgtacttatattgaaggcgagttcggcaagaagtacctgccggaaaccccgaac
gtctacagcagcaaggaaggcgcacaagaggctcacgaagcgattcgtccgtccgacgcc
aacaccgagccaagcaagctgtcgggcatggagcgtgatgcagagcggctctacgagctg
atctggcgccagttcctcgcctgccagatgctgccggcccaatacctgtcgaccacggtc
accgtcggtgccggcgatttcgagctgcgcgccaagggccgcatcctgaagttcgacggt
tacacccgcgtcatgccgcaaatcgccaagcctggcgatgacgacgtgctgccggacatg
gcccagggcgacgcgatgaagctgatcaagcttgatccgacccagcacttcaccaagcca
ccggcgcgttactcggaagctagcctggtgaaagaaatggaaaaacgcggtatcggtcgt
ccttcgacctacgcggcgatcatttcgaccatccaggaccgcggctacgtcgcgctgcac
aaccgtcgcttctattcggaaaagatgggtgacatcgtcaccgagcggctgtccgagagc
ttctccaatctcatggactatggcttcaccgccggcatggaagagaacctcgatgacgtg
gcccaaggcgaacgcgactggaaaaacgtgttggacgagttctacggcgacttcaagaag
aagctcgaagtagccgaaagcccggaaagtggcatgcgtgccaatcagccggtcatgacg
gacattccatgcaccacgtgcggccgcccgatgcagatccgtaccgcgtcgaccggcgta
ttcctcggctgctcgggttacagcctgccgccgaaagaacgctgcaaggctaccgtcaac
ctggtgccgggtgatgaaatcgcggcggacgacgagggtgaatcggagtcgctggttctg
cgcggcaagcatcgttgcccgatctgcagcaccgcgatggacgcttacctgctcgacgag
aagcgcaagctgcacatctgcggcaacaatccggattgcgacggctacgaaatcgaagaa
ggcacctatcgcatcaagggctatgaaggtccgagcctggaatgcgacaagtgtggcagc
gagatgcaactcaagaccggccgtttcggcaagttcttcggttgcaccaacgcaacgtgc
aagaacacccgcaaactgctgaaaagcggtgacgcggcgccgccgaagatggatccggtg
aagatgcctgagctgaaatgcgaaaaggtcaacgacacctacatcctgcgcgatggtgct
tccggcctgttcctggcagccagccagttcccgaaaaaccgcgagacgcgcgctccgctc
gtcatggaaatcgtgccgcacaaggatgagatcgatccgaagtatcatttcctctgtgaa
gcgccgaagaaagacccggacggcctcccggcggtaatccgttacagccgcaaaaccaaa
gagcagtacgttcagaccgaagtcgacggtaagccgaccgggtggaaggcgtactacgac
ggcggcaagtggacagttgaagacaagcgtccggcagccaaagcttaa
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