Pseudomonas hormoni: KJF94_07415
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Entry
KJF94_07415 CDS
T09556
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
phom
Pseudomonas hormoni
Brite
KEGG Orthology (KO) [BR:
phom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phom03016
]
KJF94_07415
Enzymes [BR:
phom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KJF94_07415
Transfer RNA biogenesis [BR:
phom03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KJF94_07415
Prokaryotic type
tRNA splicing ligases
KJF94_07415
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QVW25389
UniProt:
A0ABX8F0F6
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All DBs
Position
1567140..1568366
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AA seq
408 aa
AA seq
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MQEHTYQLLEVANGKPIKLWTEGVPVENEAKQQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTSLTASDLPDNLHGLRCAIEKAVPHGRTSTRS
RRDKGAWDDIPQQADQAWAALDPRFKAITDKYPKLGNTNNRGHLGTLGSGNHFIEVCLDE
ANRIWFMLHSGSRGVGNAIGNLFIQLAQADMRQHIANLPDRDLAYFEEGSQHFDDYVEAV
GWAQDFARQNRALMMQAVIQATRKVISKPFEVALEAVNCHHNYVQKERHFGENILVTRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTKAKNMFTVEDQIRA
TAHVECRKDAAVIDEIPMAYKDIDQVMHAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaacatacctaccaactgctggaagtcgccaacggcaaaccgatcaaactctgg
accgaaggtgtcccggtagaaaacgaagccaaacagcaattgatgaacactgcaaaaatg
ccgttcatcttcaagcacctggcggtgatgccggatgtgcatttgggcaagggctcgacc
atcggcagcgtgattcctaccgttggggcaatcattccggctgctgtgggagtggatatc
ggttgcggcatgatcgccgcgcgcacatcgctgactgccagtgatttgccggacaacctg
cacggcctgcgttgcgcgatagaaaaagcggtgcctcacggtcgcacatccacgcgttct
cgccgggacaagggcgcctgggacgatatcccgcaacaagcggatcaggcctgggcggca
ctggacccgcggttcaaggcgatcaccgacaaatacccgaagctgggcaacaccaacaac
cgtgggcatttgggcacgttgggcagcggcaaccacttcatcgaggtgtgtctggatgaa
gccaatcggatctggttcatgctgcacagtggatcccgtggggtaggcaacgccattggc
aacctgttcattcagttggcccaggcagatatgcgtcagcacatcgccaacctgccggat
cgtgacctggcctacttcgaggaaggcagccaacacttcgatgattacgttgaagcggtc
ggttgggcccaggacttcgccaggcagaaccgcgcgttgatgatgcaagcggtgattcaa
gcgacacgaaaggtgatcagcaagccttttgaggttgccctggaagcggtgaactgccac
cacaactatgtgcaaaaagagcggcattttggtgaaaacattctggtcacccgaaaaggt
gcagtgtcggcgaagaagggcgaactggggattattccgggatcgatgggcgcaaaaagc
ttcatcgtccgcgggctcggtaacgaggaatcgttctgctcttgcagccacggcgccggt
cgcaccatgagccgcaccaaagcgaaaaacatgttcaccgtcgaagatcagatccgagcc
actgcccacgtggagtgccgcaaggatgctgctgtcatcgatgaaataccgatggcctac
aaggacatcgaccaagtcatgcacgcccagcgcgagctggtagaagtgctgcacaccttg
cgtcaggtggtgtgcgtaaaaggatag
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