Pseudomonas hormoni: KJF94_15905
Help
Entry
KJF94_15905 CDS
T09556
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
phom
Pseudomonas hormoni
Pathway
phom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJF94_15905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phom03019
]
KJF94_15905
03009 Ribosome biogenesis [BR:
phom03009
]
KJF94_15905
Enzymes [BR:
phom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KJF94_15905
Messenger RNA biogenesis [BR:
phom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KJF94_15905
Ribosome biogenesis [BR:
phom03009
]
Prokaryotic type
rRNA helicases
KJF94_15905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QVW21399
UniProt:
A0ABX8EPE4
LinkDB
All DBs
Position
complement(3415097..3416770)
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVGDAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNAQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaatccgaatattcttgcagcc
gtcatcgcgactggctacgaagagccttcggctattcagcagcaatcgatcccgatcatc
atggccggccaggacatgattggccaggcgcaaaccggtacgggtaaaaccgctgcgttc
gccctgcctatcctgcattgcatcgatcctgccaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccaggcgttaccgttgtggccgtttacggcggcgcgcctatgggcccacaactgaaa
gcaatccgtaacggcgcacagatcgttgtcgccaccccgggccgtctgtgtgaccacctg
cgtcgcgacgaaaaagtcctgtcgaccgtgaaccacctggttctcgacgaagctgacgaa
atgctcaagctgggcttcatggacgacctggaagtcatcttcaaggctctgccagcgacc
cgtcagaccgtactgttctcggccaccctgccacagtcgatccgtgccattgccgaacgc
cacctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccaacgtgagcgcgtgatcgactccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgctcgtggcctggacgttccgcgcatcactcacgtgttcaacgtt
gacatgccgtacgatcctgagtcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtcaccggtcagaaagttgccgaagttcgcctgccggacgctcaggctgttctc
gatgcccgcatcaagaaactgaccaacagcctgtcgccgctggttggcgacgccgagtcg
acccacggtgatctgctcgatcgcctgaccgccgacatcggttgcacgccacgtgcactg
gccgctgctctgctgcgcaaggccaccaacgctcaggcgttgaccctggccgcgatcgag
aaagaacgtccactggtgccgaacaacgcacctcgtggcgatcgtccagagcgtaccggt
gatcgtccggaccgtggtgatcgtgagcgtcgcgctccggttccattggctgaaggtcgt
gctcgttgccgtaccgcgctgggtgcgcgtgatggtatcgctgccaagaacctgctgggc
gccatcctcaacgaaggtggtctggcgcgtgaagccatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgagctgccggaagatggtctggagcgtctgctgaccaagctgaag
gacactcgcgttgccggtaagcagttgaagctgcgtcgctatcgcgaagattga
DBGET
integrated database retrieval system
