Phormidium sp. PBR-2020: JWS08_02210
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Entry
JWS08_02210 CDS
T07578
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
phor
Phormidium sp. PBR-2020
Pathway
phor03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
phor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JWS08_02210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phor03400
]
JWS08_02210
Enzymes [BR:
phor01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
JWS08_02210
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
JWS08_02210
DNA repair and recombination proteins [BR:
phor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JWS08_02210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zinc-ribbons_6
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UCJ12654
LinkDB
All DBs
Position
complement(506623..507504)
Genome browser
AA seq
293 aa
AA seq
DB search
MPELPEVETVRRGLNAHTCQQRICGGAVLLDRSLARPAHADEFIEGLQGQSIRTWHRRGK
YLIAQLGEEDICHRLSPTAAGWLGVHLRMTGQLLWCHPDDPLQTHTRVRLFFEGDRELRF
VDIRTFGRLWWVPPDTSPETVITGLLSLGPEPFRPEFSTEYLIATLANRRKPIKTALLDQ
TIVAGVGNIYADESLFLSGIPPTRLCSQLTPEEIDRLRQQVIAVLGQAIEAGGTTLRDFR
DVKGINGNYGGMAWVYNRTGQPCRQCDTPIERIKLGGRSSHFCPRCQPDPKTP
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
gtgccagaacttcctgaagttgaaaccgtacgtcgtggcttaaatgcccatacctgccag
caacggatttgtggaggcgctgtactcctggaccgcagtctggcccgtcccgctcacgcc
gatgagtttatcgaggggttgcaaggtcaatccattcggacttggcatcggcggggaaaa
tatctcatcgctcaactgggtgaggaggacatctgccatcgcctcagtcccaccgctgcc
ggttggttgggggttcatctacgcatgacgggacaactcctgtggtgccatcctgacgac
cccctacagacacatacccgagtgcgtttattcttcgagggcgatcgcgaactgcgcttt
gtggatattcgcaccttcggccgcctctggtgggttcccccagacacctccccagaaacg
gtcatcaccggactcctcagtttagggcccgaaccctttaggccggagttttccacggag
tacctcatcgccaccctcgctaatcgccgtaaacccatcaaaaccgccctccttgaccaa
accattgtcgctggggtgggtaatatctatgctgacgagagtttattcctcagtgggatt
ccccccacccgtctctgtagccaactcaccccagaagaaatcgatcgcctaagacaacag
gtcatcgcggttcttggacaggccattgaagccgggggaaccaccttacgagactttcgc
gatgtcaaaggcatcaatgggaactatggcggcatggcttgggtgtataaccgtacgggg
caaccctgtcgtcaatgtgatactcccattgagcgcattaaactcggggggcgatcgtcc
catttctgtccccgctgccagcccgaccccaaaacgccctaa
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