Phormidium sp. PBR-2020: JWS08_04830
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Entry
JWS08_04830 CDS
T07578
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
phor
Phormidium sp. PBR-2020
Pathway
phor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phor00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
JWS08_04830
09124 Replication and repair
03420 Nucleotide excision repair
JWS08_04830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phor03021
]
JWS08_04830
03400 DNA repair and recombination proteins [BR:
phor03400
]
JWS08_04830
Enzymes [BR:
phor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JWS08_04830
Transcription machinery [BR:
phor03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
JWS08_04830
DNA repair and recombination proteins [BR:
phor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
JWS08_04830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
UCJ13110
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All DBs
Position
1121113..1122789
Genome browser
AA seq
558 aa
AA seq
DB search
MTYSPDNALIIQSDRTVLLDVHAPKAEAAQAAIAPFAELVKSPEHIHTYRLSALSIWNAR
AAGMPVAAMVAALQDHAKYPMPESVAQEIEALGQRYGLTTLNAGTGGDLRLQVADKPLAE
LLQRHEQVGPLLRERLSPTTFAIALGDRGLLKQALLTAGYPAEDLAGYMTGDELPLDLLT
TTHSGQPFHLRPYQKTAADLFYQSGQARGGSGVIVLPCGAGKTMVGMAAMAMIQQKTLIL
TSNLTSVHQWQQELLDKTTLTADQIAEYSGQHKATGPVTLATYQILTYRASQEDDFLHLG
LFDQQAWGLIIYDEVHLLPAPVFRITAQLQARRRLGLTATLIREDGREGDVFTLIGPKRY
DVPWRELEGQGFIAAADCTEIRIPQTQERQMDYAIAGRRYQFRIAAENPLKLDVVQTVLE
QEAGHRVLIIGEYLDQLKAIAQEVDVPLITGKTSQKKRDRLYASFRSGEISGLILSRVGN
FALDLPDADVLIQVSGKYGSRQEEAQRLGRILRPKSDGRKAQFYSLVSLRTCEEDFAQHR
QLFLTEQGYRYHIQFWEV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgacctattctcccgacaatgcgctaattatccaaagcgatcgcaccgttctactcgac
gtccacgcccccaaagccgaggcggcccaggcggccattgccccctttgccgaactggtc
aaaagtcccgaacatatccacacctaccgcctcagtgccctcagcatttggaatgcccgc
gccgccggaatgcccgttgccgctatggtggcagcgctgcaagaccatgccaaatacccc
atgcccgagtcagtggctcaggaaatcgaggccctgggtcaacggtatggcctaaccact
ctaaatgcgggaacgggtggagatttgcggttacaggtggccgataaacccctggcagaa
ctcttgcagcgccatgagcaggtggggccactgctgagagaacggttgtcgcccaccaca
tttgcgatcgccctgggggatcgcggccttctcaaacaggcgctgctgacggcaggctat
ccagcagaagatctggccgggtacatgacgggggatgaactgcccctggacttgttaacc
accacccatagcggccaaccctttcacctgcggccctaccagaaaacagccgctgatctg
ttctaccagtccgggcaggccaggggcggcagtggggtaatcgtcctcccctgtggtgct
ggtaaaaccatggtgggcatggcggcaatggcgatgatccagcagaaaaccctgatcctc
accagcaacctcacctctgtccatcagtggcagcaggaactgttggataaaaccactcta
accgccgaccaaattgccgagtatagcggtcaacacaaagccaccgggccagtcaccctg
gccacctaccaaatcctcacctatcgagccagccaggaggacgactttcttcacctgggg
ttgtttgaccagcaagcctgggggttgattatctacgacgaagttcacctcctgcccgcg
cccgtctttcgcatcaccgcccaactccaggcccgtcgtcgtcttgggttaaccgccacc
ctcattcgtgaagatggccgagagggggatgtgttcaccctcattggccccaaacgctac
gacgtgccctggcgagaattggaggggcagggctttattgccgccgccgactgtaccgaa
atccgtattcctcaaacccaggaacggcaaatggactatgcgatcgcgggacgacggtac
cagtttcgcatcgctgccgaaaatcccctcaagttagatgtggtgcaaaccgtgttggag
caagaagctggccaccgagttttaattattggcgaatacctagatcaactcaaagctatt
gcccaggaggtggacgttcccctaattaccggcaagaccagtcagaaaaagcgcgatcgc
ctctatgccagttttcggagtggcgagatttccggcctcatcctctcgcgagtcggcaac
tttgccctcgacctacccgatgccgacgtattaattcaggtctctggtaaatacgggtct
cgccaggaagaagcccagcggttagggcgtattctgcgacccaagtcagatggccgcaag
gctcagttttacagcctggtgtcactgcgcacctgtgaggaggactttgcccaacatcgc
cagttatttttaacggaacagggctatcgctatcacattcagttttgggaagtttag
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