Phormidium sp. PBR-2020: JWS08_05020
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Entry
JWS08_05020 CDS
T07578
Name
(GenBank) ribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
phor
Phormidium sp. PBR-2020
Brite
KEGG Orthology (KO) [BR:
phor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phor03016
]
JWS08_05020
Enzymes [BR:
phor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JWS08_05020
Transfer RNA biogenesis [BR:
phor03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JWS08_05020
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UCJ13145
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All DBs
Position
1166832..1168841
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AA seq
669 aa
AA seq
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MEKGNLIEFRLQGERRLAVLDRPEGKKNWVVVDEQGQTRTLSPKQMSYCLDGQSYQPSDL
AAFQSEVSTYLDPSSLEVAWELLSEDGESVAPPDLALLLFSDSTPAQCYAAHRLLSEDKI
YFKQKGDRYEPRPATQVAELKHQLEAEAQRQQAWETFLERIQEALTGTPVEWEGGARPHL
EALERYATLGDEAPGRSAAHDVLSALNRPLNHQGAFALLVDLGLWTPHENLFLRRTQIPT
HFSSKVLDVAQRCLTNCPPDTESNRLDLTHLKVYTIDDASTQEIDDGLSLEFLDGDRQRL
WVHIADPTRWLTPGDELDLEARRRCTTVYLPTGMTPMLPPELATGPMSLNSGQTCCALSF
SIILNPDGSVEEFSIHPSLVKPTYRLTYDDVDEMLELGVRAEPEIIAIADWAKTRHRWRQ
SQGSIFIDMPESAIKVNGDDVTIQVLDNSASRQLVAEMMILAGEVAARYAQEHNLAIPFR
HQSQPELPPEEELMQLPAGPVRACAIRKCMPRSEMSVFPNRHASLGLDTYTQVTSPIRRY
TDLLTHFQLKAHLRGDTQPFSSEQVQQLMMSVMVSAKEAVLVERQTCRYWAIEYLRRHGD
ETWQALMLRWIRPDDNLGSLLLEEIGIEFVWRFPRPMELGERFQVRVTYADPREDSIQFQ
EVVANPAQV
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaaggaaatcttatcgaatttcgcttacagggtgagcggcggctagccgttcta
gatcgtccagaaggtaagaaaaactgggtggtcgttgatgaacagggccaaactcgaacc
ctatcgccaaaacagatgtcctattgcctcgatgggcaatcataccagccctcagacttg
gctgcgtttcagtctgaagttagcacctacctcgatccgtcgagcttagaggtggcctgg
gaactgctctcggaagatggagaatccgtcgctcccccggacttagcgctgttactgttt
agtgactccaccccggctcaatgttacgccgcccatcggctcctgtccgaggacaagatt
tatttcaaacagaagggcgatcgctacgaacctcgccccgcaactcaggttgcagaactg
aagcatcaactcgaagctgaggctcagcgtcagcaggcctgggaaaccttcttagaacga
atccaagaggctttaacgggaactcccgtggagtgggaggggggcgctcgccctcaccta
gaggctttagaacgctatgccactctaggcgacgaagcccctggacgcagtgccgcccat
gacgtactcagcgccctcaaccgccccctaaaccatcagggggcctttgccttactggtg
gatttggggctgtggactccccatgaaaacctctttttgcggcgcactcagattcccacg
cacttctctagtaaggttctcgacgtggcccaacgctgtttaaccaactgtccaccggat
acggagtcgaaccgcctggacttaacgcacctgaaggtctacaccattgacgatgccagc
acccaagaaattgatgatggcctgagtctagaatttcttgacggcgatcgccaacgactc
tgggttcacattgccgatcccacccgttggctcacccccggcgatgaactggacttagaa
gcccgccgccgctgcaccaccgtctatctgcccacggggatgacccccatgttaccccca
gaattggccacgggccccatgagcctcaattctgggcaaacctgttgcgcccttagcttt
agcattatcctcaaccctgacggaagcgtcgaggagtttagcatccatcccagcctcgtt
aaacccacctaccgactcacctacgatgatgtcgatgaaatgctggagttgggagtccgg
gctgaaccggaaattatcgccattgctgattgggccaaaactcgtcatcgctggcgacaa
tctcaaggctcgatttttatcgatatgcccgaatcagccatcaaagtcaacggggatgac
gtcacgattcaggtcttagataactccgcctcccgtcagttagtggccgaaatgatgatc
cttgccggggaagtggcggcccgctacgcacaagaacacaacctggccattcccttccgt
caccaatcccagccagaactgcccccagaagaggagttaatgcaactccccgccggcccc
gttcgcgcctgtgccattcgcaaatgtatgccccgtagcgaaatgagcgttttccccaat
cgccatgccagtctgggcttagatacctatactcaagttacctcccccatccgccgctat
acagatttgctcacccactttcaactcaaagctcatctgcgaggagacactcaacccttc
tctagtgagcaggtgcagcagctgatgatgagtgtgatggtatctgccaaagaggcggtt
ttagtagaacgacaaacctgtcgctattgggccattgaatatctacgccgtcatggtgac
gaaacctggcaagccctgatgttacgctggattcgccctgatgataacttaggctcgctg
ctgctcgaagaaattggcattgagttcgtctggcgtttcccccggccgatggaactcgga
gagcggtttcaggttcgtgtgacctatgctgatccacgagaggatagtattcaattccaa
gaggtggtagcgaatccggcccaagtctga
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