Phormidium sp. PBR-2020: JWS08_08630
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Entry
JWS08_08630 CDS
T07578
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
phor
Phormidium sp. PBR-2020
Pathway
phor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JWS08_08630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phor03019
]
JWS08_08630
03400 DNA repair and recombination proteins [BR:
phor03400
]
JWS08_08630
Enzymes [BR:
phor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JWS08_08630
Messenger RNA biogenesis [BR:
phor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JWS08_08630
DNA repair and recombination proteins [BR:
phor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JWS08_08630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
HTH_11
Pribosyltran
HTH_Mga
TPIP1
MarR_2
RMI1_N_N
Motif
Other DBs
NCBI-ProteinID:
UCJ13784
LinkDB
All DBs
Position
2001883..2003979
Genome browser
AA seq
698 aa
AA seq
DB search
MDAFKAQALSLLQTALDNPTAEFREGQWEAIARLIQQRERLLLVQRTGWGKSLVYFLTTV
LLRQRQAGPTLLISPLLALMRNQILAAQRLNLNAVTINSTNYHNWNRIHQQIKADKVDIL
LIAPERLSNDKFQEEVLSSMAQKIGLLVVDEAHCISDWGHDFRPDYRRIVRVLQGLPENI
PVLATTATANHRVVEDIKHQLGDTLNVIRGTLTRQSLKLQAINLASPGQRMAWLAQTLPQ
LPGSGIIYTLTIKDADRLAHFLKTEGLSAKAYHSQLENEQREKLEFQLLKNKLKVLVATT
ALGMGFDKPDLGFVIHYQSPGSVVNYYQQVGRAGRAVDEAFGILLKGEEDESITDFFIKN
AFPIAANTDTILSVLLADDGNGLTMSDIEKQVNLSRSTLMKTLKFLSLEFPAPVVKKSSK
WYATPSALTYKTDPQRIEGIIKLRQQEQAQMAEYLTSQGCLMQFLQDALDDSQSQPCGRC
ANCVGHPLLNPNCNPEFLQRAHRYLTQTHPKIKPRKQFPPNALPAYGFNGKIKAELRAEV
GRALCLWGDSTWGRQIQEEKYTNEHFDATLVGAVVTMIRRWKPQPSPEWVTCVPSLNRPR
LVPSFAQRVAHRLGLPFLPVITKVRDTPLQKTRENSYQQAHNLNGAFTVLSQQVLPGPVL
LIDDIVDSRWTMTVMTALLKQAGSGAVFPVALAVNSFL
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggatgcattcaaggctcaagctttatcattattacaaaccgcattagataacccaaca
gcggagtttcgggagggacaatgggaggcgatcgctcgtctcatccagcagcgagagcgc
ctattactggtacaacgaaccggctggggaaaaagcctcgtctattttttaaccaccgtg
ctacttcgccaacgtcaggccggccccaccttactcatttcgcctctgttggccttaatg
cgtaaccaaattctggccgcacaacgactgaatctaaacgccgttactattaattctacg
aattaccacaattggaatcgaatacaccaacagattaaagcagacaaggttgatattctg
ctcattgccccagaacgattatccaatgataagttccaagaagaggttttaagttcaatg
gctcaaaaaatcggcttgcttgtcgtcgatgaagcccattgtatttccgattggggtcat
gattttcgtccagattatcgtcgaattgttcgtgttttacagggattaccagaaaacatt
cccgtgttagccacgacggctacggcaaatcatagagtcgttgaagatattaaacatcaa
ctgggtgatactcttaacgtcattcggggaaccttaactcgtcaaagcctaaaacttcaa
gctattaacttagccagtcctgggcaacgaatggcatggttagcccagaccttaccgcaa
cttcctgggagtggtattatttataccttaaccattaaagatgccgatcgcctagctcat
ttcctgaaaactgaaggtctctcagccaaagcctaccatagtcaactcgaaaatgagcaa
cgggagaaattggaatttcaattactcaagaacaaactcaaagtattggtggcaaccact
gctctaggaatgggatttgacaagccggatttgggctttgtgattcactatcaaagccca
ggttcagtggttaactactatcaacaagttggacgagccggtcgtgctgttgatgaggca
tttggtattttgttgaaaggagaagaagacgaaagcatcacagatttcttcattaaaaac
gcttttccaattgctgcaaatactgatacaattttgtcggtgctccttgcagatgacggc
aatggcttaaccatgagtgacatcgaaaaacaagtcaatctatctcgttcaacactcatg
aaaacattaaagtttttatctttggaatttccggcgcctgtagttaaaaaaagttcaaaa
tggtatgccactccttcagcactcacgtataaaacagacccgcaacgaattgaaggcatc
ataaaacttcgtcaacaagaacaagcccaaatggcagagtacctaacaagtcagggctgt
ctcatgcagtttcttcaagatgccttagatgatagccagtcccagccttgtggacgctgt
gcgaactgtgtcggtcatcccctccttaatcccaactgcaatcctgagtttttgcagcgg
gcccatcgttacttaacacaaacccatcctaagattaaaccccggaaacaatttcctcct
aatgccttgcccgcctatgggtttaatgggaaaattaaagctgagttaagagcagaagtc
gggcgggccttatgtttatggggagatagtacctggggacggcagattcaggaagaaaaa
tatacaaatgagcattttgatgctaccctggtcggagccgtggtcaccatgattcgccga
tggaagccgcaaccttcccctgagtgggtgacttgtgttccctccttaaatcgtccccgg
ttagtcccgagttttgcccagcgggtggctcatcgcttgggcttacccttccttcccgtc
attactaaagtccgggatacccccctacaaaaaactcgagaaaatagctatcaacaggct
cataatttgaatggggcctttaccgttctgtctcagcaagttctcccgggtccggtgtta
ttgattgatgatattgtggattctcgttggacaatgaccgttatgaccgcacttctcaaa
caggcgggaagtggtgcggtgtttccggtggcgttagcggtcaattccttcctttga
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