Phormidium sp. PBR-2020: JWS08_08870
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Entry
JWS08_08870 CDS
T07578
Name
(GenBank) AMP-binding protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
phor
Phormidium sp. PBR-2020
Pathway
phor00061
Fatty acid biosynthesis
phor00071
Fatty acid degradation
phor01100
Metabolic pathways
phor01212
Fatty acid metabolism
phor02024
Quorum sensing
phor04146
Peroxisome
Module
phor_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
phor00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
JWS08_08870
00071 Fatty acid degradation
JWS08_08870
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
JWS08_08870
09145 Cellular community - prokaryotes
02024 Quorum sensing
JWS08_08870
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
phor01004
]
JWS08_08870
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phor04147
]
JWS08_08870
Enzymes [BR:
phor01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
JWS08_08870
Lipid biosynthesis proteins [BR:
phor01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
JWS08_08870
Exosome [BR:
phor04147
]
Exosomal proteins
Exosomal proteins of breast milk
JWS08_08870
Exosomal proteins of breast cancer cells
JWS08_08870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
ROF
Motif
Other DBs
NCBI-ProteinID:
UCJ14312
LinkDB
All DBs
Position
complement(2061080..2063035)
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AA seq
651 aa
AA seq
DB search
MSNQLPPQEELNLKNSLDYSQVNSLTEVWSIASDRFQNLTALDTPHDDPPVKLSYRDLWQ
QIQTFATALQSLGLDSLDDLPPRVVLFSENSPRWFIADQGIIAAGAADAVRSSQADRDEL
LYIAQHSQSRGLVLENLATLEKLQSSDDESLRLSQDIAWVVLLSEETPPEETPFRLLNFS
QFMDLGDAARFKLPQSDRSTLATLIYTSGTTGRPKGAMLTHGNLLHQVNAFRHVFVPQAG
DRALSILPSWHVYERTCEYFLLSQGCAQIYTSLRYFKNDLKEHQPQIMIGVPRLWESIYE
GVQKNFREQPANKQKLVNFFIGVSRRHLQAQNIRDGLILDATPPSGLERLIARLQALALT
PLHGLGHKLVYSKVQAATGGKIKFLISGGGSLAQHIDEFFAIIGIKLLVGYGLTETAPVL
TVRRAWANLQGSAGLPLVETEIRIVDPETGRLLPQGERGLVLGRGSQVMRGYFNNPEATE
KAIDSEGWFNTGDLGCLLPGGHLRLTGRAKDTIVLSNGENIEPQPIEDACVRSAYVDQIV
LVGQDQRQLGALIVPSWEALAQWGTAQGLTVNSEAVPPLDLSQEPVQQLFREELSREVKN
RPGYRADDRIGPFRLVQEPFSMENGMMTQTLKIKRPVVQERYRDTINEMFG
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatcaactccctccccaagaggaactgaatctaaaaaactccctagattacagc
caagtcaactccctgaccgaggtctggtcgatcgccagcgatcgcttccagaacctgacg
gccttagataccccccacgatgaccccccggtcaaactctcctatcgggatctctggcaa
cagattcagaccttcgccaccgccttacaaagtctgggcctagactcactcgatgactta
ccgccgcgcgtggtgctattttcggaaaacagtccccgctggttcattgccgatcaggga
attatcgccgccggggccgccgatgcggtgcgatcgagtcaagctgatcgcgatgaactc
ctctacattgcccaacatagtcaaagtcggggactcgtcctggaaaacctcgccaccctg
gagaagttgcaatcctccgacgatgaatctttgcgtttgagtcaggatatcgcctgggtg
gtgttactctcagaagaaacccctcccgaggagacgcctttccgtcttctcaacttcagc
caatttatggatttaggggatgcggctcgcttcaaactcccccagagcgatcgcagtacc
ctggctaccctcatctacacctcaggcaccactggccgtcctaagggcgccatgttgacc
catggcaacctcttgcatcaggttaacgccttccgtcatgtcttcgtcccccaagcgggc
gatcgcgccctcagcatcctccccagttggcacgtgtacgagcgcacctgtgaatacttc
ctcctctcccaagggtgcgcccaaatctacaccagtctgcgctacttcaaaaacgacctc
aaagaacatcaaccgcaaatcatgattggcgttccccgtctctgggaatccatctacgag
ggggtacaaaagaacttccgggaacaaccggccaacaaacaaaaactggttaacttcttc
atcggcgtcagtcgtcgccatctccaggcgcaaaatatccgcgatggcctcatcctcgat
gccacccctccctcgggcttagaacggctcatagcccgcttacaagccctggctctgacc
cctctccatggcttgggtcataaactggtctatagcaaagttcaggccgcaacagggggg
aaaatcaagtttctcatcagtggcggtggctctttggcgcaacatatcgatgagttcttc
gccattattggcattaaactgctggtgggctacggactgacggaaaccgcccccgtctta
acggtacgccgtgcttgggctaatttacaggggtcggcgggactgcctctagtggaaacg
gaaatccgcattgtcgatccggaaacggggcgtttactgccgcaaggagaacgaggattg
gtcttggggcgaggctctcaggtcatgcggggctattttaacaacccagaagccacggaa
aaagccattgacagcgaaggctggtttaataccggcgatttgggctgtttactccccggc
ggtcacctgcgtctgacgggacgggcgaaagataccattgttctgagcaatggtgagaac
atcgaaccgcaaccgattgaggatgcttgtgtgcgcagtgcctatgttgaccaaattgtt
ttggtgggacaggatcagcgtcaattgggtgcgttgattgttccgagttgggaggctctg
gctcaatggggaacggctcaaggactgacggtgaatagtgaggcggttccgccgttggat
ctcagtcaggagccggtgcagcaactgttccgggaggaactcagccgggaggtgaaaaac
cgtcctggctatcgggccgatgatcgcattggccccttccggctggtacaggagccgttc
tcgatggaaaatggcatgatgactcagaccctaaaaattaaacggccggttgtgcaggag
cgttaccgcgataccattaacgagatgttcgggtag
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