Phormidium sp. PBR-2020: JWS08_09145
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Entry
JWS08_09145 CDS
T07578
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
phor
Phormidium sp. PBR-2020
Pathway
phor03410
Base excision repair
phor03430
Mismatch repair
phor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JWS08_09145 (recJ)
03430 Mismatch repair
JWS08_09145 (recJ)
03440 Homologous recombination
JWS08_09145 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phor03400
]
JWS08_09145 (recJ)
DNA repair and recombination proteins [BR:
phor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JWS08_09145 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JWS08_09145 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JWS08_09145 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UCJ13867
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Position
2132834..2134951
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AA seq
705 aa
AA seq
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MLLLLSISVRPNLPNQRWTLADLPDAEIQSLAESLNVSPLIAQILMERGLDSPETAQIFL
EPDTLELPPPIQDFPDLAISLDLISEMIETERAIAICGDYDADGMTSTALLLRALGTLGA
KVDYAIPSRMSDGYGINSRLVNEFAEAEVGLIITVDNGISAHGPVEEARELGMEVIITDH
HDLPEVIPPASSILNPKMAPENSPYRGMAGVGVAYMLAMHLGEHFQQGETFRLPMLELLT
LGTIADLAPLTGVNRYWVLQGLHLLANSQIPGIQALVQVSGAGDKGKKSLKPDAIGFRLG
PRINAVGRIGDPQLVIELLSTDDAGIALERAMQCEQINRTRQEMCEEIEREAIAWSDSLR
HTLPQTRVLVPLQANWHHGVIGIVASRLVERYGVPVFICTYEDEELQQVRGSARGIPEFN
VFEALNYCGDLLTKYGGHPAAGGFSLPEANLEAFRQRLSEFACQCLQPEHLKPLVRLSGE
LGFEELDLERFEEVEQLQPFGIGNPTPVFYSTQVRVLNQKTVGKGHLKLELAQGESEKSI
GAIAWRWGEYFPLPSPVDLAYKLGENEWQGQVSLQLEVVGARRPEGVVWASTSLSPAEEE
IPEATVIESTELSPANDEEAVTNAGETLQRFEYQNRVYFCGLYPHGETKELRIRNDRGQV
LAVNQGSQTGLLGTSRENARYVDVRERRFYDLIKAALAVLNGSSS
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
ttgctactcttgctttcaatctccgtgcgccccaatcttccgaaccaacgctggactctg
gcggatctccctgacgctgagatccaatctctggctgagtctctcaatgtgtctcccctc
attgcccaaatcctcatggaacggggcttagacagtcctgaaacggctcaaatcttccta
gaacccgataccctagaacttccgccgccgattcaggatttccccgatttagccattagt
ctcgatctcatctcggaaatgattgagacggaacgggcgatcgccatctgtggggactat
gatgctgatggcatgaccagtacggcgttgctattgcgggccttgggaaccttgggggca
aaggttgattatgccattcccagccgcatgagcgatggctatggcattaactcccgcctc
gtcaatgagtttgcagaggcggaggtgggcttaattattaccgtcgataatggcattagc
gcccatgggccggttgaggaagcccgagaactggggatggaggtgattattaccgatcac
catgacttgcccgaggtgattccccccgccagttccattctcaaccctaaaatggctccc
gagaactccccctatcgcggtatggcgggggtgggggtggcctatatgttggccatgcac
ttgggggagcatttccagcagggggaaaccttccgactccccatgttggaactcctgacg
ctgggaacgatcgccgacttggcccccctcaccggcgtgaaccgatattgggtcttacag
gggttgcacctcctggcaaattcgcaaattccgggcattcaggccctcgtgcaggtgtcg
ggagcgggggataagggcaaaaaatccctaaaacccgatgccattggtttccgcctcggt
cctcggattaacgcggtggggcgaattggtgatccccagttggtgattgaactcctttca
acagatgatgcggggatcgctttggaacgagcgatgcaatgtgaacagattaaccgcacc
cgccaggagatgtgtgaggagattgaacgggaggcgatcgcctggagtgattccttacgc
catactctcccccagacgcgagttctggttcccctgcaagccaactggcatcatggggtg
attggtattgtggcctcgcgtttagtggaacgctacggggttccggtgtttatctgcacc
tatgaggatgaggaactgcaacaggtgcgaggttcggcgcgagggattccggagtttaat
gtctttgaagccctgaattattgcggggatttactgaccaagtatggcggacatccggcg
gctggggggttctcgctcccggaagccaatttagaggcgtttcgtcagcggttgagtgag
ttcgcctgtcaatgcttgcaaccagaacatctcaaaccactggtgcgactgagtggggag
ttggggtttgaggagttggatttagagcggtttgaggaggttgaacaactgcaacccttt
ggcattggcaatcccacgccggtgttttattccactcaggtacgagttttgaaccagaaa
actgtggggaagggccatctaaagctagaactagcccagggggagtctgagaaatccatt
ggggcgatcgcctggcgttggggcgagtattttcccttacccagtccggtggatttggcc
tacaaactgggggagaatgagtggcaaggacaggtgtctctccagttagaggtggttggg
gcccgtcgtcctgagggagtcgtctgggcttcgacttcgctcagccccgctgaggaggag
attcccgaggcgacggtgattgagtcgacggagttaagtccagctaacgatgaggaggcg
gtgactaatgctggggaaacgttacagcggtttgagtaccaaaatcgcgtctacttctgt
ggcctctatccccatggggaaaccaaagaacttcgcattcgcaacgatcgcggccaagtc
ctggcggtgaatcagggcagccaaacgggcctgctagggacttcacgggagaatgctcgc
tacgtcgatgtgcgagaacggcgattttacgatttaattaaagcagccctggctgtttta
aatggatcgtcgtcttga
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