Phormidium sp. PBR-2020: JWS08_11090
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Entry
JWS08_11090 CDS
T07578
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
phor
Phormidium sp. PBR-2020
Pathway
phor03420
Nucleotide excision repair
phor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JWS08_11090 (pcrA)
03430 Mismatch repair
JWS08_11090 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phor03400
]
JWS08_11090 (pcrA)
Enzymes [BR:
phor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JWS08_11090 (pcrA)
DNA repair and recombination proteins [BR:
phor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JWS08_11090 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
JWS08_11090 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
DEAD
Viral_helicase1
AAA
PcrA_UvrD_tudor
ResIII
AAA_22
DUF2383
CarD_TRCF_RID
Ku_PK_bind
Motif
Other DBs
NCBI-ProteinID:
UCJ10414
LinkDB
All DBs
Position
2530859..2533192
Genome browser
AA seq
777 aa
AA seq
DB search
MTATSDFLRQLNPSQRTAVEHHQGPLLVVAGAGSGKTRALTYRVANLILKHRVDPEQILA
VTFTNKAAKEMKARVETLFAQTLAAKTHGKALEVLDAAEQTQLRSRVWRTYIKPLWIGTF
HSLCGKILRFDINKYRDENGRQWTRSFTIFDESDVHALVKEIVVNQLNLDDRKFNPKSLR
YAISNAKNKGWSPAQLERNEPGYRGRTIAEVYRAYQDQLAANNALDFDDLIRVPVELFQQ
NPDVLQYWHDKFRHILVDEYQDTNRTQYNLIRLLATNGQTPREFQDWQKRSVFVVGDVDQ
SIYSFRMADFTILLDFQDDFGDGLEDDFTQTMVKLEENYRSTQTILEVANSLIELNSERI
DKVLRPTRGEGEPICIYRADDEGEEADFVASQMAALVRENPELNWGDFAILYRTNAQSRS
FEDVLVRRNIPSRVVGGLRFYDRREIKDVLAYLRVIVNPADSVSLKRVINVPKRGIGKTT
LAKIDSVAQQLNVPFWDIISDETSIKTVAGSRAKRILEFVQLIQEQQAQVDSAEATEIFE
AVIEGAGYIEALKQEGTDEADNRRQNIEELYNALVQYGEESEDTSLSGFLASASLASDLD
NLDDGEAAVSLMTLHSAKGLEFPVVFVVGMEDGLFPNYRSQQDPRALEEERRLCYVGITR
AQEQLFLTHALSRRLWGQIQTAAPSQFLAELPREFIKGNTAPRRGASSSRKKGSGGSNAA
QLTQDWKVGDRIVHEHFGMGEVSMIFGKAPKLSLAVKFARAGQKIIDPKHEPMQRLR
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgacctctgattttctgcgccaactcaacccctcccaacgcaccgccgttgaa
catcatcagggccccctcctcgtggttgcaggcgccggatctggcaaaactcgtgccctc
acctatcgtgtcgctaacttaattctcaaacatcgggtcgaccccgagcagattttggcc
gtcaccttcaccaacaaagccgccaaagaaatgaaagcgcgggtggaaactctcttcgcc
caaaccctcgccgcgaaaacccatgggaaagccttagaagtcctagatgcggccgaacaa
acccaactgcgatcgcgggtttggcgaacctacatcaaacccctgtggattggcaccttc
catagtctgtgcggcaaaatcctccgcttcgacattaataaatatcgcgacgagaacggg
cgacaatggacccggtctttcaccattttcgacgaatccgacgttcacgccctcgtcaaa
gagattgttgtcaatcaactcaacctcgacgatcgcaaattcaaccccaaaagcctccgc
tacgccatcagcaacgccaaaaacaaaggctggtcccccgcccaactcgaacggaacgag
ccagggtatcggggacgcaccatcgccgaagtctaccgcgcctaccaagaccaactcgcc
gccaacaacgccctcgacttcgacgatctcatccgcgttcccgtagaactattccaacag
aacccggatgtgctgcaatactggcatgataaattccgccatatcctggtggatgaatat
caagataccaaccgcacccagtacaacctgattcgtctgttggctaccaatggccaaacg
ccccgcgagtttcaggattggcaaaaacgctcagtctttgtcgtcggcgatgtggatcag
tccatctacagctttcgtatggccgacttcaccatcctcctcgattttcaggatgatttc
ggcgatggcttagaggacgacttcacccaaaccatggtcaaactggaggaaaactatcgc
tccactcagaccatcctagaggtcgccaacagcctcatcgaactcaacagcgaacggatt
gacaaagtgctacggcccacccgaggcgagggagagccgatttgtatctaccgcgccgat
gacgagggtgaggaagccgactttgtggcctcgcaaatggccgccctcgtccgagaaaat
cccgaactcaactggggagattttgccattctctaccgtaccaacgcccaatcccgtagt
tttgaggatgtgctagtccggcgcaacattccttctcgagtggttggtggcctgcgcttt
tatgaccgccgggaaattaaggatgtcttagcatatttgcgtgtcattgtcaaccctgcc
gatagtgtcagtctaaaacgcgtcattaacgtgcccaaacggggcattggcaaaaccacc
ctcgccaaaatcgacagtgtggcccaacaactgaatgttcccttctgggacattatcagc
gatgaaacctccattaaaaccgtcgccggttctcgggccaagcgcatcttagaatttgtc
cagcttatccaagagcagcaggcccaggtcgactcagctgaagccaccgagatttttgaa
gcggtgattgagggagccggctatatcgaagccctcaaacaagaaggaaccgacgaagcc
gacaaccgccgtcagaacatcgaagaactgtataacgccttggtgcaatatggtgaagag
agcgaggacacctctctcagtggctttctcgccagtgcctccctggcctcggatttagac
aacctcgatgatggggaagcggcggtgtctctgatgaccttgcattcagccaaagggtta
gaatttcccgtggtctttgtggtggggatggaagatggcctcttccccaattaccgcagt
caacaagatcctcgggccctcgaagaagaacggcgactgtgctatgtggggattacccgg
gcccaagagcaactctttctcacccatgccctcagtcgtcggctttggggacaaattcaa
accgccgccccatctcagtttttagcagaactgccgcgagagtttattaaagggaatacc
gccccgagacgaggggcctcctcctcccggaagaaggggtctggggggtccaatgccgct
caactaacccaagattggaaagtgggcgatcgcattgtccatgagcattttggcatgggc
gaagtctccatgattttcggcaaagcccccaaactctccttagcggtgaaatttgcccgg
gccggccagaaaattatcgatcccaaacatgaacccatgcaacgactccgataa
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