Phormidium sp. PBR-2020: JWS08_11830
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Entry
JWS08_11830 CDS
T07578
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phor
Phormidium sp. PBR-2020
Pathway
phor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JWS08_11830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phor03021
]
JWS08_11830
03400 DNA repair and recombination proteins [BR:
phor03400
]
JWS08_11830
Enzymes [BR:
phor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JWS08_11830
Transcription machinery [BR:
phor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JWS08_11830
DNA repair and recombination proteins [BR:
phor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JWS08_11830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
UCJ10543
LinkDB
All DBs
Position
2700218..2702092
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AA seq
624 aa
AA seq
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MPKVEQRFDYVKIAIASPERIRSWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCER
IFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKGI
PSYMAILLDMPLRDVEQIVYFNAYVVLNPGNADNLAYKQLLLEDQWMEIEEQLYDEDSQL
EGIEVGIGAEAIQQLLADMELEAVAEKLREDISNSKGQKRAKLIKRLRVIDNFIATSARP
DWMVLDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIIRN
EKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLEIHQCGLPREMAIELFQPFVIHRLIRQGIVNNIKAAKKLISRNDPNIWDVLEE
VIEGHPVMLNRAPTLHRLGIQAFEPILVDGRAIQLHPLVCPAFNADFDGDQMAVHVPLSL
EAQAEARLLMLACNNILSPATGQPIVTPSQDMVLGCYYLTAENPTVQDKNEQTFANPEDL
VIAHERGLVHLHKYVWVRLSPEDTIVTNGDDPLIEEQTLDDGSVLKRYQYSRQRFDADGK
LIAQYAYTTPGRVIYNQAIREALA
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaagtcgaacagcgctttgattacgtcaaaatcgccatcgcttccccggagcgg
attcgcagttggggagaacggacacttcccaacggccaggtggtcggtgaagtcaccaaa
cccgaaaccatcaactaccgcaccctgaaaccggaaatggacggcttattctgtgagcgc
attttcggccccgccaaagactgggaatgtcactgcggcaaatataaacgagttcgtcac
cgtggcattgtctgcgaacgctgcggcgtagaagtcaccgaatcccgcgtgcgtcgtcac
cgcatgggctacatcaaactggccgcccccgtgacccatgtttggtatctcaaagggatt
cccagctacatggctatcttgctggatatgcccctgcgagatgtggagcaaatcgtctat
ttcaacgcctatgtggtcttgaatcccggcaacgccgataacttggcctacaaacaactg
ctcctcgaagaccaatggatggaaatcgaagaacagttgtacgacgaagactcccaactc
gaagggattgaagtggggattggcgccgaagccatccagcagttgctggcagatatggaa
ctcgaagccgtcgctgagaagctgcgggaagatatttccaactccaaagggcaaaaacga
gccaaactcatcaaacgactgcgggtgattgataacttcatcgccaccagcgctcgaccc
gactggatggttctcgatgccattcccgtgattccccctgacttgcgccccatggtgcag
ctcgatggggggcgttttgccaccagtgacctcaatgacctctatcgtcgagtcattaac
cgcaataaccgactggcgaggttacaggagattttggccccggaaattatcatccgtaac
gaaaaacggatgttgcaagaggccgtcgatgcccttatcgacaatggacggcggggacgt
acggtggttggtgcgaataatcgccccctgaaatccctcagcgatatcattgaagggaaa
caaggtcgcttccgtcagaacttgcttggaaaacgggtggactactccggacggagtgtg
attgtcgtcggtcctaagttggaaatccaccaatgtggcttacctcgggagatggcgatc
gaactgttccaacccttcgtgattcaccggctgattcgtcagggcatcgtcaacaacatc
aaagccgccaaaaaactgatttctcgcaacgaccccaacatctgggatgttctcgaagaa
gtcatcgaaggtcacccggttatgcttaaccgggcaccgaccctgcaccgtttggggatt
caggccttcgagccgattctggttgatggtcgcgccattcaactgcaccccctcgtctgt
ccggcctttaacgccgacttcgacggagaccaaatggccgttcacgtccccctctccctc
gaagcccaagccgaagcgcggctgctgatgttggcctgtaataacatcctctcccccgct
accggacaacccatcgtgactccgagtcaggacatggtcttgggttgctactacctcacc
gccgagaatcccacggttcaagacaagaacgaacagaccttcgctaaccccgaagatcta
gtgattgcccatgaacgaggattggtccacctgcataaatatgtctgggtgcgtctgagt
cccgaggacacaatcgtcaccaatggcgacgacccccttatcgaagaacagaccctcgac
gatggcagtgtcttaaaacggtatcagtacagtcgccaacgcttcgacgccgatggaaaa
cttatcgcccaatatgcctacaccactccagggcgggttatctataaccaagccattcga
gaagccctagcctag
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