Phormidium sp. PBR-2020: JWS08_19450
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Entry
JWS08_19450 CDS
T07578
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
phor
Phormidium sp. PBR-2020
Pathway
phor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JWS08_19450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phor03019
]
JWS08_19450
03009 Ribosome biogenesis [BR:
phor03009
]
JWS08_19450
Enzymes [BR:
phor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JWS08_19450
Messenger RNA biogenesis [BR:
phor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JWS08_19450
Ribosome biogenesis [BR:
phor03009
]
Prokaryotic type
rRNA helicases
JWS08_19450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Helicase_RecD
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UCJ11874
LinkDB
All DBs
Position
4468371..4469858
Genome browser
AA seq
495 aa
AA seq
DB search
MTSVTPEQTSAPETNSDSQTPIDDTPGNFESFNLRPEILEGIQEAGFRVPSPIQEQAIPV
ILQGRDAIARAQTGTGKTAAFGLPALNSVHRDSSEGVQVLVIVPTRELASQVSDELYRLG
RCAGIRTVAVYGGQSIDRQVSLIRRGAQVVTATPGRLLDHLKSNRLKDFSPSIVILDEAD
EMLDMGFLDDIEEIFTYLPKERQTLLFSATLPSAIRQLSKKILTDPLSIDVTPKDSTINT
DISQRYYVLEEREREEALVRLIDTEAPNKALIFCRTKKETDMLCTTLVSRGYAASSLHGD
MQQRQRNEAIESFKRGRIDLLIATDVAARGLDINDVTHVFNYHIPFDSDSYVHRIGRTGR
AGRKGTAITLVTPLEFKKLTRIMHVAGSPMVYGEVPTIGEAKQQYQVELASKLQHQHIQE
EAAELLQRLEEEVDINQIACKALSMLLEQQPVGGPSRIGFSVQEVENLLHRSKRRKGGPR
KRRNNNYRPRRTNRR
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgacatctgtaactcccgaacaaacatccgctcccgaaaccaactccgattcccagacc
cctatcgacgataccccaggtaacttcgagtcctttaacctccgcccggaaatcctcgaa
gggattcaagaggccggcttccgtgttccgagcccgattcaagaacaagccattcccgtg
atcctccaaggacgcgatgcgatcgcccgcgcccaaaccgggacggggaaaacggcggct
tttggactcccggcgctaaattctgttcatcgcgatagcagcgaaggggtgcaagtcctc
gtgattgtgcccacccgcgagttagcctcccaagtcagtgacgaactctatcgcctcggc
cgctgtgccggtattcgcaccgttgcggtctatggcggacaatccattgaccgccaagtg
tccctcattcgtcgtggcgctcaggtcgtcaccgcgacccccggccgcctactcgaccac
ctcaaatccaatcgtctcaaggacttctccccctccatcgtcatcctcgatgaagcggac
gagatgttggatatgggcttcctcgatgacattgaggaaatcttcacctatttaccgaaa
gagcgacaaaccctgctcttttcggccacccttccctcggcgattcgtcaattatcgaag
aagatccttaccgatcccctctcgattgacgtcacccccaaagactcaaccatcaatacc
gatatcagccagcgctactatgtgcttgaagaacgggaacgggaagaagccttagtgcgc
ctgatcgatacagaagcccccaataaggctttgatcttctgtcgcaccaagaaagagacg
gatatgctttgcaccaccctcgtctcgcgaggctatgcggccagttccctccatggggat
atgcagcagcgacaacgcaatgaagccattgaaagcttcaagcgaggacgcatcgactta
ctcatcgccaccgatgtcgccgcccgagggttggatatcaacgacgtgacccacgtcttt
aactatcacattcccttcgactccgatagctacgttcaccgcattggccggactggacgg
gccggacgcaagggaaccgccattaccctcgtcacccccctagagttcaagaaactcacc
cggattatgcacgttgccggttcgccgatggtgtatggcgaagttcccaccattggcgaa
gccaaacaacaatatcaggtggaactggcctcgaagttgcaacatcaacatattcaggaa
gaagcggccgagttgctacaacgacttgaagaagaagttgatatcaatcagattgcctgc
aaggccctgtcgatgctgcttgaacagcaaccagtgggtggccccagtcgcattggcttc
agcgttcaggaagtggaaaaccttctacaccgctccaagcgtcgtaaaggcggtccccgc
aaacgccgcaacaacaactaccgtccccgccggacgaatcgccgttag
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