Phormidium sp. PBR-2020: JWS08_21480
Help
Entry
JWS08_21480 CDS
T07578
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
phor
Phormidium sp. PBR-2020
Pathway
phor03410
Base excision repair
phor03430
Mismatch repair
phor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JWS08_21480 (recJ)
03430 Mismatch repair
JWS08_21480 (recJ)
03440 Homologous recombination
JWS08_21480 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phor03400
]
JWS08_21480 (recJ)
DNA repair and recombination proteins [BR:
phor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JWS08_21480 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JWS08_21480 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JWS08_21480 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
UCJ12231
LinkDB
All DBs
Position
complement(4937023..4939260)
Genome browser
AA seq
745 aa
AA seq
DB search
MEWSHPSPLWHCSTPDSPPAEFVRAVQQYATAGGERLARLLWNRQQRDLSQLRGFLDSRH
YQPTAAAAFGAELQQAIARLQQAIAHGDAVAIWGDFDADGVTATSVLWEGLGQFFDRSRQ
LSYYIPNRLTESHGLNHAGIERLAAQGVSLIVTCDTGSTNLAEIERAAELGVDIIVTDHH
TLLPQRPPVTALINPRNFPEDHPLYHLSGVAVAYKLVEGLYEALPEIPQQPKEGLLDLVA
IGLIADLVELRGDCRYLAQRGLQQLREQMTNPTHPGVKALLQHCKRHGDRPTDISFGIGP
RINAVSRVYGDASFCVELLTCRDGDRAETLARQADEANARRKEVQQRVLQSVQQQLQQID
LSTTTVLVLSDPQWEVGVLGLVAGQIASEWGRPTLLLWEDHQSDPPLAKGSARSVAGLDL
YELVNSQAHLLHRFGGHPFAAGLSLPLENLPLLREALNQRLVQKLGRFGGMQPILNYDLE
VTVADLGQDLFRELKHLEPCGMGNPVPRLRVRNGWFEGARHRKLKVKGQKLQYLITSFRL
RDESCDHGFPGMWWGHYEDDLPPGRCDAIVELDFNSKRSNYEVRLIDVRSIDMEAIEVDE
GETLTQPQSRIPDPMSPQPIAIADLEAASQQTWLTLIGIAKYLSRTQETRPRTVIQQKLG
IGDRPLEIGLHQLSELGYSIHSPSPDLIQIRHIQPREGDDRPLNQLAQPFLDAVCEEQFR
QPYIILGTLKNSSSRSGADSSKSSR
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggagtggtcgcatccctcacccctttggcactgtagcaccccagactcgccgccggct
gagtttgttcgagcggtgcaacagtacgccactgctgggggggaacgcttggcgaggtta
ctttggaatcgacagcaacgagacctgtctcagctacgaggattcctcgattcacgccac
taccaaccgactgctgcggctgcatttggggcagaactccagcaggcgatcgcccgcttg
caacaggcgatcgcccacggagacgccgtggcaatctggggagatttcgatgcggacgga
gtgacggcgacgtcagtgctttgggaaggactggggcagtttttcgaccgttcgcggcag
ttgtcgtactacatccccaatcgcctcacggagtctcatggcctgaaccacgccggaatt
gagcggttagcggcacaaggggtgagcctgattgtcacctgtgatacgggaagtacgaat
ctggcggaaattgagcgggcggcggagttgggagtcgatattattgtcaccgatcaccat
actctattgcctcaacgtcctcctgttacggcgttgattaatcctcgcaatttccctgag
gaccaccctctctatcatttgtcgggggtggcggtagcctataagttggtggaaggtctc
tatgaggccttaccggagattcctcaacagccgaaggagggtttgttggatttggtggcg
atcggtttgattgccgatttggtggagttacggggagattgtcgctatttagcccagcga
gggttgcaacaactccgggaacagatgactaaccccactcatccgggggtgaaggctttg
ttgcagcattgtaaacgtcatggcgatcgccccaccgatatctcctttggcattgggccg
cgaattaacgccgtcagtcgggtgtatggggatgccagtttttgtgtggagttgttgact
tgccgagatggcgatcgcgcggaaaccctggcccgacaagcggatgaagccaacgctcgc
cgcaaggaagtgcagcagcgagtgttgcaaagtgtgcaacagcagcttcaacagattgat
ttgtcgacgacgacggttttagttctcagtgatcctcaatgggaggtgggggtgttgggc
ttggtggcgggacagattgccagtgaatggggtcggccaaccctgttactctgggaagat
catcagagtgatccgcccttggcgaaagggtcagcccgttctgtggcaggattggatctc
tatgagttagtcaacagtcaggcccatctgctgcatcgctttggcggccatccctttgcg
gcggggttaagtcttcccctggagaatttaccgctgttacgagaagccctcaatcaacga
ttggtccaaaaattgggacgatttggtgggatgcaaccgattctcaactatgacttagag
gtgacggtggcggatctcggtcaagacttgtttcgggagttgaaacatctcgaaccctgt
gggatgggaaatcccgtccctcgcttgcgagtgcgaaacggttggtttgagggggcgaga
catcgaaaactcaaggtcaaggggcagaaattacaatatctgattacctcgtttcgactg
cgagatgagagttgcgatcatgggtttccggggatgtggtggggtcattatgaggatgac
cttcccccaggccgctgtgatgcgattgttgaactcgatttcaactccaagcgttcaaat
tatgaggttcgtctgattgatgtccgttcgattgatatggaggcgatcgaggtggacgag
ggggagacgctcactcaaccccagtctcgcatcccagacccgatgtcgccacaaccgatc
gccattgccgatctagaagccgccagtcaacaaacctggttgacgctgattgggattgcc
aagtatctcagccgaacccaggaaactcgcccacgaaccgtgattcagcagaaactgggg
attggcgatcgccccttggagattggtctacatcagttgtcagaactcggctacagcatc
cattcccctagccccgacctgatccagattcgccacattcagccccgagagggcgatgat
cgccccttaaaccagttggcccaaccgttcctggatgcggtgtgcgaagaacagttccgc
caaccctacataattttaggaaccttaaagaactcatcttcgcgatcgggggcggactct
agcaagtcttcccgataa
DBGET
integrated database retrieval system
