Phormidium sp. PBR-2020: JWS08_21610
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Entry
JWS08_21610 CDS
T07578
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
phor
Phormidium sp. PBR-2020
Pathway
phor03030
DNA replication
phor03430
Mismatch repair
phor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JWS08_21610 (holA)
03430 Mismatch repair
JWS08_21610 (holA)
03440 Homologous recombination
JWS08_21610 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phor03032
]
JWS08_21610 (holA)
03400 DNA repair and recombination proteins [BR:
phor03400
]
JWS08_21610 (holA)
Enzymes [BR:
phor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JWS08_21610 (holA)
DNA replication proteins [BR:
phor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JWS08_21610 (holA)
DNA repair and recombination proteins [BR:
phor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JWS08_21610 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
DNA_pol3_delt_C
Motif
Other DBs
NCBI-ProteinID:
UCJ12252
LinkDB
All DBs
Position
4964744..4965721
Genome browser
AA seq
325 aa
AA seq
DB search
MAIYVYWGEDEFACDRAVQTLRDRSLDPAWGSFNFDKIPADTPDATIEGLNQAMTPPFGG
GQRFVWLVDSPILQQCSQDLQKNLERTLPQLPESSVLLLTSRKKPDQRLKSTKLFKKLAE
FQEFSSIPPWKTELLIRRVREVARSLEVSITPVAAERLAEAVGNNTRQLFTELEKLKLFV
GDEQVGVNAVEELVTTTTQTSLQLAKTILQGDTAGALGLVHDLIARNDVPIVISATLIGQ
FRTWLWVKLMIELRERDEKAIAQAAEVGNPKRIYFLRQEVSRISLGQLQQTLPILLALET
QLKSGGDAIATLQMRVIELCGVCRG
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atggcgatttatgtctattggggagaggatgagtttgcctgcgatcgcgcggtacagacg
ttacgcgatcgcagtctcgatccggcttggggttcgtttaacttcgacaaaatccccgct
gataccccggatgccacaattgaagggttaaatcaggcgatgactcctccctttggcggt
ggacaacgctttgtctggttagtggacagcccgattttgcaacaatgttcccaagatctc
cagaaaaaccttgaacgcacccttccccaactcccagagagttcggtgttactcctcacc
agtcgcaaaaaaccggatcagcggctgaaatccactaaactgttcaaaaagctggctgag
tttcaggaattttcctcaattcctccctggaaaacggaactcctgattcgccgagttcgc
gaggttgcccggagtctggaggtttcgattacgccagtggcggcggaacggttggcggaa
gcggtgggaaataatactcgccagctatttacggaactcgagaagctaaaactgtttgtg
ggagacgaacaggtgggggtaaatgcggttgaggaactggtcaccaccaccacgcaaacg
agtttacaactggcgaaaacgattcttcagggagatacggcgggggctttgggtttggtt
catgatttaattgcccgtaatgatgttcctattgtcatttcggcgacgttgattgggcaa
tttcgcacctggctttgggtgaagttgatgatagagttacgagaacgggatgagaaggcg
atcgcccaggcggcagaggtgggaaacccaaaacgcatttactttctccgtcaagaggtg
agtcgcatttctctgggacagttacagcaaacgttaccgattttattagctttggagact
cagttaaagagtggtggggatgcgatcgccactttgcaaatgagggtgatagaattatgc
ggtgtttgtcggggataa
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