Phosphitispora sp. TUW77: ABFY19_12405
Help
Entry
ABFY19_12405 CDS
T10992
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
phos Phosphitispora sp. TUW77
Pathway
phos02020
Two-component system
phos02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
phos00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ABFY19_12405 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ABFY19_12405 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phos03021
]
ABFY19_12405 (rpoN)
Transcription machinery [BR:
phos03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABFY19_12405 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF2624
HTH_12
TBPIP
HSP9_HSP12
HTH_Tnp_ISL3
HTH_21
Rod-binding
Motif
Other DBs
NCBI-ProteinID:
XPO21659
LinkDB
All DBs
Position
complement(2565758..2567194)
Genome browser
AA seq
478 aa
AA seq
DB search
MRMGFGLYQEQTQKLIMTPELRLAIKILQLSTVELTELIENELVENPLLEIAESAADTVD
VADAAADTQNEKSTEQELADQMEKVDIDWDQYFNDKAGSLNDFTPSYQEEPPRFENIIAE
FPTLQGYLMFQLAFSPLNVEEKLVGEFFIGNIDDNGYLHCSVEEAAVKCSVPNNIAEKVL
EIIQGMEPPGIGARNLEECLLIQYVQLELKNKLLKEIITNYLHEIAAGKIMKVAKKLGVQ
LHRVQEALDLLKLLEPKPGRIFSPADRTRYITPDVVVEKVDNEYIILVNDVSAPRLSVSD
AYKNIVRGNNTDQESRKYVEEKLNSAVWLIRSIEQRREMLYKVSRCIVDYQRDFFDRGVK
YLKSMNLRNVAETLDIHESTVSRATAGKYMQTPRGLFEMKFFFSSGVSNIYGTSTSAEAV
KKLIKELVEAEDQYKPMSDQRIAENIQAKGVNISRRTVAKYRDEIGILPTSQRRRYKK
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatggggtttgggctctaccaggagcaaacacaaaagcttataatgactcctgaa
cttaggctggcaataaaaattttgcagttatcgaccgttgaacttacagagcttattgaa
aatgaattggtggagaacccattgttggaaattgctgaatctgctgcagatacggttgat
gtcgccgatgctgcggctgacacccaaaatgagaaatctaccgaacaggaattggcagac
caaatggaaaaagtggatattgactgggatcagtattttaatgataaagccggtagcttg
aatgactttacacccagctatcaggaggaacccccgcgtttcgaaaatattattgcggaa
tttccgaccctgcaagggtacttaatgtttcaactggcattcagccccttgaatgtggaa
gaaaaattagtgggggaattctttatcggaaacattgatgataatggatatctgcattgt
tccgtggaggaggctgcggtcaaatgcagtgttcctaataatatagctgaaaaggtcctc
gaaattattcagggcatggagcctcctggaattggggccaggaaccttgaggagtgcttg
ttgattcagtatgtccagcttgaacttaaaaataagttgcttaaggaaattatcaccaat
tacctgcatgaaattgctgccggaaaaatcatgaaagttgctaaaaaacttggtgttcag
ctgcatcgggttcaggaggcgttggaccttctgaaattacttgagcctaagccggggagg
atattttcacctgctgacagaacccggtacattactcctgatgttgttgtggaaaaggtg
gataatgaatatataatccttgtaaatgatgtttcagccccacgtctgtcagttagtgac
gcatataaaaatatagtgaggggaaacaatactgaccaggaaagccgtaaatatgttgag
gaaaagcttaactctgccgtatggttgataagaagtattgaacagcgccgggaaatgctt
tataaggtttcccgctgtatagtagattaccagcgggacttttttgacaggggagtaaag
tacttgaaaagcatgaacctgagaaatgtggctgaaaccttggatatacacgaatccaca
gtaagcagggctactgccggaaagtatatgcagactccgcgaggcttatttgagatgaag
tttttcttttccagcggtgtctccaacatttatggaacatcaacttctgcagaggctgtg
aaaaaattaattaaggaattggtggaggcagaagaccagtataaacctatgagtgaccag
agaatcgcagagaacattcaggcaaagggagtcaatatttccaggcgtactgtagccaaa
taccgggatgaaattggtattttaccgacttctcaaaggagaaggtacaaaaaataa
DBGET
integrated database retrieval system
