Photobacterium sp. CCB-ST2H9: L4174_000315
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Entry
L4174_000315 CDS
T10200
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
phot Photobacterium sp. CCB-ST2H9
Pathway
phot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L4174_000315 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phot03019
]
L4174_000315 (rhlB)
Enzymes [BR:
phot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L4174_000315 (rhlB)
Messenger RNA biogenesis [BR:
phot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L4174_000315 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
UTM57375
LinkDB
All DBs
Position
1:complement(70851..72155)
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AA seq
434 aa
AA seq
DB search
MKTTHITEQKFADLGLHPQVLQGLEEKGFHYCTPIQAQALPVVLSGRDIAGQAQTGTGKT
LAFLTATFNHLMLTPAPEERKTNQPRAIIMAPTRELAIQIYNDAAPLLNSTGLTAGLAYG
GEAYEKQKQHLENGVDILIGTCGRIIDFFKQRVIDLKGIQVVVLDEADRMFDLGFIKDIR
FLFRQMPNPKARRNMLFSATLSYRVKELAFEHMNTPENVVVEPDQKTGHRIQEELFYPSN
QDKMPLLQTLIEEDWPDRAIIFANTKHSCENIWAHLEADNHRVGLLTGDVPQKKRVRILE
QFTQGEVDILVATDVAARGLHIPQVTHVFNYDLPDDAEDYVHRIGRTGRAGASGHSISFA
CEAYSHNLLAIETYIEHTIPRSNYDPSAMLEDLPPPVKVQRAPRQGSRRSSGSRQGQGQQ
GRQRSRRRSPQKTQ
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgactcatatcacagagcaaaaatttgccgacctggggctacaccctcaggtt
ttacaagggctggaagagaaagggttccattattgtaccccaatccaggcccaggcattg
ccggtagtgctctccggccgtgacattgccggtcaggcgcagacagggactggcaagacc
ctggctttcctgacggccacctttaaccatctgatgctgacgccagcacctgaggagaga
aagaccaatcagccccgtgcaatcattatggcacctacacgggaactggcaattcagata
tacaacgatgctgcgccactgctaaatagcaccggcctgaccgcaggtctggcttacggt
ggcgaagcgtatgaaaaacagaaacagcatctggaaaacggcgtcgacattctgatcggc
acctgcggccggatcatcgactttttcaaacagcgcgtgattgacctgaaaggcattcaa
gtggtggttctggatgaagccgaccggatgttcgatctgggctttatcaaagatatccgc
ttcctgttccgccagatgccaaacccgaaagcacgccggaacatgctgttctcagcaacg
ctgtcttaccgggtgaaagagctggcgttcgagcacatgaacaccccggaaaacgttgtc
gttgagccggatcaaaaaaccggtcaccgcattcaggaagaactgttctatccgtcaaat
caggacaaaatgcccctgctgcagacgctgattgaagaagactggccggatcgtgcaatt
atttttgccaacaccaagcacagctgtgaaaacatctgggcacacctggaagccgataat
caccgcgtcggactgctgaccggcgacgtgccgcagaaaaaacgcgtgcgcattctggaa
cagtttacccagggcgaggtcgacattctggtggcgactgatgtggctgcacgaggtctg
catattcctcaggtaacgcatgtgttcaactacgatctgcctgacgatgccgaagactac
gtacaccggattggccggacgggccgtgcaggagccagtggtcattccatcagctttgcc
tgtgaagcctattcgcataatctgctcgcgattgaaacttatatcgagcataccattcca
cgttcgaattacgacccaagtgcaatgctggaagacctgccgccgccggtcaaagttcag
cgcgcaccgcgtcagggcagccgtcgcagcagtggatcccgtcagggtcaaggacaacag
ggacgtcagcggagccgccgccgttctccacagaaaacgcagtaa
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