Photobacterium sp. CCB-ST2H9: L4174_000920
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Entry
L4174_000920 CDS
T10200
Symbol
mutM
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
phot Photobacterium sp. CCB-ST2H9
Pathway
phot03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
phot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
L4174_000920 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phot03400
]
L4174_000920 (mutM)
Enzymes [BR:
phot01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
L4174_000920 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
L4174_000920 (mutM)
DNA repair and recombination proteins [BR:
phot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
L4174_000920 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_6
Lar_restr_allev
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
UTM57493
LinkDB
All DBs
Position
1:219231..220043
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AA seq
270 aa
AA seq
DB search
MPELPEVEVSRMGITPHVVGQTVTQVTVRNPSLRWPVPAELQLLQGQTIRGVSRRAKYLL
LETDAGFAIIHLGMSGSLRILPEDVPPAKHDHVDVKLASGEVLRYNDPRRFGAWLWQERD
SEHPVLSKLGPEPLSEEFNTPYLIGKAQGKRTVIKQFIMDNQVVVGVGNIYANESLFSAG
IHPQAPAGSLSPERLSLLVDEIKSVLNKAITQGGTTLKDFRQSDGKPGYFAQELQVYGKA
GQPCPRCGQRLNEAKIGQRATVFCSGCQPL
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattacccgaagttgaagtcagtcgtatggggatcaccccgcatgtggttggt
cagaccgtcactcaggtgacggtgcgcaaccccagtttgcgctggccggtccctgccgag
cttcagttgctgcaagggcagacaattcgcggggtcagtcgcagagccaagtacctgctg
ttggaaaccgatgccggtttcgccattatccatctgggtatgtctggcagtttacggatt
cttccggaggatgttccgccggcgaaacatgatcacgttgatgtgaagctggccagtggt
gaagttctgcgttacaacgacccccgccggttcggtgcctggctgtggcaggaacgcgac
agcgagcacccggtgctgagtaaactggggccggaaccgttgagtgaggaattcaataca
ccgtatctgatcggcaaagcccaagggaaacgtacggtgattaagcagttcatcatggat
aaccaggtggtcgtgggggtcgggaatatctatgccaatgagtccttgttctcggcgggg
attcatcctcaggcgccagcaggctcattgtcaccggaacgactgagtttattggttgac
gaaattaaaagcgtgctgaacaaagcgattacgcagggcggcaccaccttaaaagatttc
aggcagagtgacggtaagcccggctactttgcccaggagctgcaagtgtatggcaaggca
ggtcagccgtgcccacgttgtggccaacgactcaacgaggccaaaatcgggcaacgtgct
acagtcttctgtagcgggtgccagcccctgtaa
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