Photobacterium sp. CCB-ST2H9: L4174_002260
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Entry
L4174_002260 CDS
T10200
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
phot Photobacterium sp. CCB-ST2H9
Brite
KEGG Orthology (KO) [BR:
phot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phot03019
]
L4174_002260 (hrpB)
Enzymes [BR:
phot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
L4174_002260 (hrpB)
Messenger RNA biogenesis [BR:
phot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
L4174_002260 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
HA2_N
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UTM57744
LinkDB
All DBs
Position
1:491592..494081
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AA seq
829 aa
AA seq
DB search
MSQLPIEAVLPELHTVLQRHRQLILKAPPGAGKSTRLPLSLLESRAVSGKIVMLEPRRLA
ARNIAAYLATQLGENVGQTVGLRMRGETKVSTATRLEIVTEGVMTRMLQQDPELSGIDLL
IFDEFHERSLHADTSLALALEVQEAMRDDLRLLVMSATLDHEALQTLLPEAGFLASEGRS
FPVDYRYQSQGTSAQQSPGVVTDWTGKQILKLLSEESGSMLVFLPGAGEIRRLAEWLEAA
AGAEVIIAPLYGQLDTQAQQQAIQPAPKGKRKVVLATNIAETSLTIEGIRLVVDTGWERV
SQWDPKTGISRLAMVRIARSSAEQRAGRAGRLEPGICLRLYSEEMLSRQPAVPQPEILRA
DLSRLALELAQWGCTSADELRWLDTPADAAMQQARVLLQSLGALDERGQLTARGQLIQQS
GTEPRLAAILAHARALPASAQTTAALLVALLEEPARGISNPDLAYQLHLLESDQLPRSKL
YRQRARQHLAMLRDGQDSAPGWRTDRRWLATLMAAGFPDRIALSRGQEGRFQLANGQGVS
VDHEQLLATETALVVADVVKTRQGDSRVFTAVAADIEQLREDLPPLFHEREWLDWDDKKG
RLVAEKQCCCGKLVIQRTPMAEPDPARASEALLNAIRRQGLDVLPWNARSESLRIRARCA
EAWLPELALPAMDDASLLASLEDWLLPFMTGISTLKALANLDLTAALEAHLGWAQAKALD
HALPTHYEVPTGSRYPIRYQPGQAPVLAVRMQEMFGEQTSPVIANGKIAVVLELLSPAQR
PLQITSDLAAFWQGAYKDVQKEMKGRYPKHVWPDDPASHAPTRKTKKFM
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
ttgtcacagctccccattgaagccgttctgcctgaattgcacacggtgttgcagcgccat
cgtcagctcattctcaaagcgcctcccggtgccggtaaatcgacccgtttaccgctctcg
ttgctggaatcccgtgccgtaagcggcaaaattgtgatgctggaaccccgccggctggcg
gcccgaaacattgcggcttatctggccactcagttgggggagaacgttgggcagactgtt
ggcctgcgaatgcgcggagaaacgaaggtcagtactgcgacccggctggagattgtcacg
gaaggggtgatgacccgcatgttacagcaggatcctgaattatccgggatcgatctgctg
attttcgacgaatttcatgagcgaagcctgcatgctgatacgtcgctggcgctggcgctg
gaagtccaggaggcgatgcgggatgacctcaggctgctggtgatgtcggcgacgctggat
catgaagccttgcagactctgctgccggaggccggatttctggcatctgaggggcgcagt
ttcccggtggattatcgttatcagagtcagggaacgtcggcccagcaaagtcccggcgtg
gtgacagactggaccggcaagcagattctgaagttactgtcggaagagtcaggttccatg
ctggtctttctgcccggggccggtgaaatccgccgtctggctgagtggcttgaagcggcg
gcaggggcggaggtcatcattgcacctttatatggtcagttggatacgcaggcgcagcag
caggcgattcagccggcaccgaaagggaaacgcaaagtggttttggcgaccaacatcgcg
gaaaccagtctgacgatcgaagggatccggctggtggttgataccggctgggaacgggtg
tcgcaatgggatccgaaaaccgggatcagccgtctggcaatggtgcggattgcccgctcg
tcggccgaacagcgtgccgggcgggccggacgtctggagccgggcatttgtctgcgcttg
tacagcgaagaaatgctgagccgccagcctgcggtcccgcaacctgagattctgcgcgcc
gatctgagccgtctggcactggaactggcccagtggggatgcaccagcgccgacgaatta
cgctggctggatacacccgccgatgctgcgatgcagcaggccagagtgctattacagtct
ctgggcgcactggacgaacggggccaactgaccgccagaggccagctgattcagcaatca
ggcaccgagcccagactggctgcgatcctggcgcatgcccgtgctttacctgcatcggcg
cagacgaccgccgcgctgctggtggccctgctggaagaaccggcacgtggtatcagcaat
ccggatctggcttatcagctgcatttactggaatccgaccaactgccccgcagcaagtta
taccgtcagcgggccagacagcatctggcaatgctccgggatggacaggattctgcaccg
ggctggcgtacagaccgacgctggctggcgacgctgatggcagccggttttcctgaccgg
attgcgctgtcccgtgggcaggaaggccgttttcagctggcgaatggtcagggtgtcagt
gttgatcatgaacagcttctggcgacggaaactgcactggttgtggcggatgtcgtcaag
acccgtcagggcgatagccgggtgttcacagctgttgccgcagatatcgagcagttacgg
gaagatttgccacctttattccacgagcgggaatggctggactgggatgataaaaaaggg
cggctggtcgcagaaaagcaatgctgttgtggcaagctggtgattcagcgaacacccatg
gccgaacctgatccggcccgggccagtgaagccctgctcaatgccatccggcgtcagggg
ctggatgtcctgccgtggaatgcccgcagtgaaagtctgcgaatccgggcccgttgtgcc
gaagcttggctccctgaactggcgttgcctgcaatggatgatgccagtctgctggcgtct
ctggaagactggctattgccctttatgaccggtatcagcaccctaaaggcgctggcaaat
ctggatctgacggcggcactggaagcgcatctgggatgggcgcaggcgaaggcgctggat
cacgcgctgccgactcattatgaggtgcccaccggctcccggtatccgatccgttatcag
ccaggacaggcaccggtgctggcggtccggatgcaggagatgtttggtgagcagacgtcg
cccgtgattgccaacggcaaaattgcggtggtgctggagctgctgtctcccgcccagcgg
ccgctacagatcacctcagatctggccgcattctggcagggagcctataaagacgtgcag
aaagaaatgaagggtcgttacccgaaacatgtctggccggatgatcctgccagccatgcg
ccaacccgaaaaaccaagaaatttatgtaa
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