Photobacterium sp. CCB-ST2H9: L4174_003035
Help
Entry
L4174_003035 CDS
T10200
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
phot Photobacterium sp. CCB-ST2H9
Pathway
phot03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
phot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
L4174_003035 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phot03400
]
L4174_003035 (recD)
Enzymes [BR:
phot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
L4174_003035 (recD)
DNA repair and recombination proteins [BR:
phot03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
L4174_003035 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
NAT10_TcmA_helicase
Viral_helicase1
SH3_13
UvrD-helicase
AAA_22
AAA_16
SLFN-g3_helicase
nSTAND3
AAA_24
PhoH
FtsK_SpoIIIE
AAA_28
SRP54
DEAD
CbiA
UvrD_C
TrwB_AAD_bind
NTPase_1
Terminase_6N
MukB
TraI_hel_assoc_N
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
UTM58857
LinkDB
All DBs
Position
1:647718..649820
Genome browser
AA seq
700 aa
AA seq
DB search
MIAQLDTLARGGLLRSLDTQFAKFVCDSVAGFDDPQVRDLLALAAAWVSQELGRGHVCLP
LSFLQSQPLGLPKEVAESLLSLLPDAWRLPASWPAILNGSAAISDGLQPTPLVLCDDRLY
LHRYWQDEQTVARRLLSAARLPETGQTVTQSAGMLDTLFARSYFYLFDGLSALRQSGDDS
AERRRFVVCDLLDVVTPDALKWEKIDAVLVQAQRFSDLTPLDTLIPASACLNWQKVAAAT
ALSRPFAVISGGPGTGKTTTVAKLLAALVMQNQPAAASVDAARVPHIVLVAPTGKAAARL
TESIGKAVQSLPVAPALQAAIPTQASTLHRLLGAIPGRTAFRHHAGNPLHADVLVVDEAS
MVDLPMMARLLEALPPHAKLILLGDKDQLASVEAGAVLGDICAFARQGYSVPQAKQLSEM
TGFVLPAGQSDSLSPIADCLCVLQKSYRFHALSGIGQLASAINSGQPDRLAAVWQQAYSD
IRQYPLGAEHYQQLIQAMSNFYRRYLEAMTQGEPPAEVLRQFASVRLLCALREGDFGVKG
LNSRIERQLAKDKLITPGDETWYVGRPVMITRNDHGLGLYNGDIGIAMPDPDGRLDGRGR
PALRVYFDMPDGSIRSFLPSRLPEHELVYAMTIHKSQGSEFADTLMILPPEFSPILTREL
IYTGVTRAKERLYLYARPEVLQRSIQRCIQRASGLEVNLS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgattgcgcagctggatacgctggcgcgtggcggtttgcttaggtcgctcgatacccag
tttgccaaatttgtctgcgattcggtggccgggtttgatgaccctcaggtccgggattta
ctggcgctggcagctgcctgggtcagccaggagctgggccgggggcatgtctgcctcccg
ctgtcgtttctgcagagtcagccactggggttaccgaaagaggtggcggaatctttatta
tcgctgttgccggatgcctggcgattgccagccagctggccagcgatcctgaatggctcg
gcagcgatttcggatggtctgcagcccacgccgctggtgctttgtgacgatcgattgtat
ctgcatcgctactggcaggacgagcagacggttgcccgtcgcctgttgtctgcggctcgt
cttcctgaaaccggtcagactgtcacgcaatcggccgggatgctggataccttgtttgcc
cgcagttatttctatttgtttgatggactgtcggcgctgcgtcagtccggtgacgacagt
gcggagcgccgtcgtttcgtggtctgcgatctgctggatgtggtgacgccagacgcgctg
aaatgggaaaaaattgacgctgtactggttcaggctcagcgcttttcggacctgacaccg
ctggatacgttaatccctgcatctgcctgtctgaactggcaaaaggtggcggcagcaacg
gccctgagccggccatttgcggtgatctccggtgggcccggaaccggaaaaacgacgacg
gttgcgaaactgctggcggcgttggtgatgcaaaaccaacctgctgccgcgtctgtcgat
gctgcccgggtgccccatattgtactggtggcaccgaccggtaaggctgcggcccggctg
accgaatcgattggtaaagcggtccagtcgctgccggtggctccggcgttgcaggccgcc
attccgacgcaggccagtaccttgcaccggttgctcggagcaattccggggcggactgct
tttcggcatcatgcagggaatccactacatgcggatgtcttggtggtcgatgaagcgtcg
atggtcgatttgcccatgatggctcgcttgctggaagcattgccgccgcatgccaaactg
attctgctgggggataaagatcagctggcttccgtggaagccggagcggtgctgggagac
atctgtgctttcgcccgtcagggctacagtgtgccgcaggcaaaacagctcagtgagatg
accggctttgtgctgcctgccggacagtcggactcactcagtccgattgctgattgtctc
tgcgtgctgcaaaaaagttaccgtttccacgcattgtcggggatcggccagctggccagt
gctattaacagtggtcagccggatcggctggctgcggtctggcagcaagcatacagtgat
atccggcagtacccgctcggagccgagcattaccagcagttgattcaggcgatgtcgaat
ttttaccggcgttatctggaggcgatgacccaaggtgaaccgccagccgaggtgctgcgg
caatttgccagtgtccggctgctgtgtgcgctgcgggaaggggactttggtgttaagggg
ctcaacagccggattgaacgccagctggcgaaagataagctgatcacgccgggggatgaa
acctggtatgtcggtcgtccggtgatgatcacccgtaacgatcatggtctcggtttgtat
aacggtgatattgggattgcgatgccggatccggacgggcgattggatggtcgcggccgt
ccggcgcttcgggtgtattttgatatgccggacggcagtatccgcagctttctgcccagc
cgtctgccggagcatgagctggtgtacgcgatgacaattcataaatctcagggttcagaa
ttcgccgataccctgatgattctgccgccggagttcagtccgatcctgacccgggaactg
atttataccggggtcacgcgggcgaaggaacgactgtatctctatgcccggcctgaggta
ttacagcgcagtatccagcgctgtattcagcgggccagtggtctggaagtgaacctcagc
taa
DBGET
integrated database retrieval system
