Photobacterium sp. CCB-ST2H9: L4174_010110
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Entry
L4174_010110 CDS
T10200
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phot Photobacterium sp. CCB-ST2H9
Pathway
phot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L4174_010110 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phot03400
]
L4174_010110 (mfd)
Enzymes [BR:
phot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L4174_010110 (mfd)
DNA repair and recombination proteins [BR:
phot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L4174_010110 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
AAA_5
RecG_dom3_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UTM56199
LinkDB
All DBs
Position
1:2161889..2165344
Genome browser
AA seq
1151 aa
AA seq
DB search
MTIQTLFSLPVPTKAGDKRFVGQVSGAALAIAIAELAKSHQGPVLAVVPDTQTALRLQPE
VSQFTQVEVNVFPDWETLPYDSFSPHQDIISDRLARLYQLPTLNEGILLVPVSTLLQRLT
PRTFLHQHALLVSKGDRLSLEKLRLQLEAAGYRHVDQVMEHGEYASRGSLLDLFPMGNNE
PYRIDFFDDEVDSIRQFDPESQRSTGEIDNIHLLPAHEFPTDEVAVENFRMRWRERFEAR
REPESIYQQVSKRTWPAGIEYWQPLFFEQTDTLFDYLPADTLLLTIGELEQAAEHFLSDA
DYRYQERRVDPLRPLLEPKELWLSASDMFSGFKTLPQVRLSKAPEEEKAGRFNPAITPVP
PLTINHQLKEPMSALRKFQESFTGKIIFSVASEGRREALLDLLARIKLRPMVCQSLEEAM
AAASPCTLVIGAAEQGFILEDPQLAFICESDLLGERVIQRRRREEKRTVSSDTIIRNLAE
LKIGQPVVHLDHGIGRYQGLQTLEAGGLTTEYVTLEYQGGAKLYVPVASLHLISRYSGGA
EEAAPIHKLGGEAWQKARKRAAEKVRDVAAELLDVYAKRELKPGFKFKLDREAYADFCTG
FPFEETHDQALAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFAAVDNSKQVTVLV
PTTLLAQQHFENFRDRFANTPVRVEVLSRFKTAKEQKAILEDVKEGKVDILIGTHKLLNA
EVKYHDLGLLIVDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPARRLAIKTFVREREDLIIREAVLREIMRGGQVYFLHNDVESIEKAAQELATLIPEA
RITTAHGQMRERDLERIMSDFYHQRFNLLVCTTIIETGIDVPTANTIVINRADHLGLAQL
HQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAG
ELLGDEQSGQIQSVGFTLFMEMLEQAVESLKAGKEPSLDDLLREQTEVELRLPALLPEDY
IPDINTRLSLYKRIASACNEESLDELKVELIDRFGLLPDATTNLLTLNKLKLKAASLGLR
RIEAGEKGGYFEFTENAAIDPGFLVSLLQSNPQQFRMDGPTKLKVTAPLTDRRERIKYVD
GFLTQLAENTL
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgacaatacagactttattttcgcttccggtaccaaccaaagccggcgataaacgattc
gtcggtcaggtttccggagctgcgctggcgattgccattgccgagctggccaagagtcat
caggggccggttctggcggtcgtgccggacactcagaccgcgcttcgcctgcagccggaa
gtgagccaatttacccaagtcgaggtcaatgtgtttccggactgggaaaccctgccctac
gacagtttttcaccgcatcaggacatcatctccgaccggctggcgcgcctgtatcagttg
cctaccctgaatgaaggtatcctgctggttcccgtcagtaccctgctgcaacggctcaca
ccgcgcacttttctgcatcagcatgccctgctggtcagcaagggcgatcgcctgtcactg
gagaaactgcgccttcagctggaagccgccggttatcgccatgtcgatcaggtgatggaa
catggtgaatatgccagccgtggttcactgctcgatttattcccgatggggaataacgag
ccgtaccggattgatttctttgatgatgaagtggattccatccgccagttcgatccggag
tcccagcgttcgaccggcgaaatcgacaacattcatctgctgcctgcccatgaatttcca
accgatgaagtggcggtagaaaacttccggatgcgctggcgcgagcgctttgaagcacgc
cgggaaccggagtcaatttatcagcaggtcagtaaacggacctggcctgccgggatcgaa
tactggcaacctctgttttttgagcaaacagacaccctgtttgactacctgccggcagac
accctgctgctcaccattggcgaactggaacaggccgccgaacattttctgagtgatgca
gattaccgctatcaggaacgccgcgtcgatccgttgcgcccgttacttgaaccgaaagag
ctctggctgtcggcaagcgacatgttctctggtttcaaaacgctcccgcaggtcagactg
agcaaagcgccggaagaagaaaaagccggtcgattcaacccggcaatcacacccgtgccg
cctctgacgatcaaccatcagctcaaagaaccgatgtctgccctgcgcaagtttcaggaa
agcttcaccggcaaaatcatattctcggttgccagtgaagggcgccgcgaagccctgctg
gatctgctggcacggatcaaattacggccaatggtttgccagagtctggaagaagcgatg
gctgctgccagtccctgcaccctggtgatcggagctgcggaacaaggattcattcttgaa
gatccgcaactggcctttatctgtgaaagcgatttgctgggtgaacgggtcattcagcgt
cgccgacgtgaagaaaaacggaccgtcagttccgataccattattcgcaatctggcggaa
ctgaaaatcggccagcctgtcgtccatctggatcacggcattggccgctatcagggactg
cagaccctggaagccggcggcctgacgactgaatacgtcacgcttgaatatcagggaggc
gccaaactctatgtaccggttgcctcactgcacctgatcagccgctattcaggcggcgcc
gaagaagctgccccgattcataaactgggcggggaagcctggcagaaagcccgaaagaga
gccgctgaaaaagtccgggatgtggccgccgagctgctggatgtctacgcgaaacgtgag
cttaaaccgggtttcaaattcaaactcgatcgagaagcttacgcagatttctgcaccggt
ttcccgtttgaggagacccatgatcaggcactggcgattaacgccgtgctgtctgatatg
tgccaggcgaaagcgatggatcggctggtgtgcggtgacgtgggctttggtaaaaccgaa
gtcgccatgcgtgccgcttttgctgccgtcgataacagcaagcaggtgactgtgctggtc
ccgacaactctgctcgctcagcagcacttcgagaacttccgtgatcgttttgccaacact
ccggtccgggttgaagtcctgtcccgtttcaaaacggccaaagagcaaaaggccattctg
gaagacgtcaaagaaggcaaggtcgatattctgattggcacccacaagctgctcaatgcc
gaggtcaaatatcatgatcttggcctgctgattgtcgatgaagaacaccgatttggggtt
cgccagaaagagaaactgaaatcactgcgcgcagatgtcgatatcctgactctgaccgca
accccgattccgcgaaccctgaatatggcgatgagcgggatgcgggatctgtcgatcatt
gccactccgccggcacgccgactggcgatcaagaccttcgtccgtgagcgggaagatctg
attatccgggaagcggtgctgcgtgaaatcatgcgcggcggtcaggtgtatttcctgcac
aatgacgtcgaaagcatcgaaaaagcggcccaggaactggcaacgctgatcccggaagcc
cggattaccacagcccacggtcagatgcgtgagcgcgatctggaaaggatcatgagcgac
ttttaccaccagcgtttcaatctgctggtgtgtacaaccatcattgaaaccggtatcgac
gttccgacagccaataccatcgtcatcaacagagctgatcatctgggactggcgcagtta
caccagttacgcggacgggtcggtcgttcccatcaccaggcttacgcctatctgctgacg
ccacatccgaaacgcatgaccaaagatgccgtcaaacgtctggaagcgattgcgtcactg
gaagatctgggagcgggctttacgctggcaacacacgacctcgaaattcggggagcaggt
gaactgctgggtgacgaacaatccggccagatccaatctgtcggttttaccctgtttatg
gaaatgctggaacaggccgttgagtcactcaaagcaggaaaagaaccatcgctggatgat
ctgctgcgtgaacagaccgaggtcgagctgcgtttgccagccttgctcccggaagactac
attccggatatcaacacccggctgtcgctttacaaacgcatcgccagtgcctgcaatgaa
gagtcgctggatgaactgaaagtggagctgattgatcgctttggtctgctgccggatgcc
acaacgaatctgctcaccctgaataagctgaagctgaaagcggccagcctgggcctgcgc
cggattgaagccggcgaaaaaggcggttatttcgaatttaccgaaaatgccgccatagac
cccggttttcttgtgagtctgttacaatcaaacccacaacaattccggatggatggcccg
accaaactgaaggtcacagcgccgctgacggatcgccgggaacgcatcaagtatgttgac
ggcttcctaacacaattagctgaaaacaccctataa
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