Photobacterium sp. CCB-ST2H9: L4174_011580
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Entry
L4174_011580 CDS
T10200
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10912
two-component system, repressor protein LuxO
Organism
phot Photobacterium sp. CCB-ST2H9
Pathway
phot02020
Two-component system
phot02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
phot00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
L4174_011580
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
L4174_011580
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
phot02022
]
L4174_011580
Two-component system [BR:
phot02022
]
Lux family
LuxQN/CqsS-LuxU-LuxO (quorum sensing)
L4174_011580
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
AAA_lid_14
Sigma54_activ_2
HTH_8
Mg_chelatase
AAA_5
AAA
AAA_16
HTH_30
AAA_19
HTH_29
HTH_23
MCM
AAA_7
AAA_PrkA
AAA_30
Parvo_NS1
AAA_2
AAA_22
HTH_7
TIP49
HTH_28
Motif
Other DBs
NCBI-ProteinID:
UTM56467
LinkDB
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Position
1:complement(2490937..2492391)
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AA seq
484 aa
AA seq
DB search
MDSKQKVRQVLMVEDTASVAALYKSYLNPLGLNVNIVGTGADALKAMKASVPDLILLDLR
LPDMTGMEVLEDVRGNHPELPVVIMTAHGSIDVAVEAMRFGAKDFLIKPCEADRLRITVN
NALKRDKDDSKTRTNLTQGAQYQGFIGTSLPMQAVYRVIESAASSRATVFITGESGTGKE
VCAEAVHAASPRSNMPFVALNCAAIPKELIESELFGHVKGAFTGALTERQGAVELANKGT
LFLDELCEMDLDLQSKLLRFIQTGTYQKVGSSVTNSVDVRFVCATNRNPWEEVKQGRFRE
DLYYRLHVIPISLPPLRERGDDVIEIAHALLGHISVEESKRFCRFSPEVLERFRQHAWPG
NVRELQNVIRNIVVLNDGEEVLTQMLPPSVSSDSGAEIASSKREPTSSVSEAGAVHQHMG
TPSAVTPGQIEPLWQVEKRTIQHAIAACDGNIPRAAGLLEVSPSTIYRKLQAWQEAESSQ
RESD
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggatagcaagcagaaagtgcggcaggtattaatggtcgaagacacggcgtctgtcgcg
gccttatataaatcctacctcaatcctctcgggctgaatgtaaatatcgtcgggacaggg
gcggatgcgctgaaggcgatgaaagcttcggtacctgatttaattctgctggatttgcgt
ttaccggatatgaccggcatggaagtgcttgaagatgtccgcggtaatcatcctgaactg
cctgtcgtgatcatgacggcacatggctccattgatgttgcggtggaagcgatgcgtttt
ggcgcaaaagatttcctgatcaaaccctgtgaagctgaccggttacgtattacggtgaac
aatgcgctgaagcgtgacaaagacgacagcaaaacacgcacaaaccttacgcaaggtgcg
caatatcaagggtttatcggaaccagcttaccgatgcaggcggtttatcgtgtgattgag
tcggccgcttccagccgggcgaccgtgtttatcaccggtgaaagtggtacagggaaagaa
gtgtgtgctgaggcggttcatgcagcaagtccgcgttcgaacatgccttttgtcgctctg
aactgtgcggcaattccaaaagaactgattgagagtgaactctttggtcatgtaaagggg
gctttcaccggcgcattgactgaaaggcagggagctgtcgaactggcgaacaagggaaca
ctgtttcttgatgagctttgcgaaatggatcttgatttgcaaagcaaattgctacggttc
attcaaacgggtacgtatcaaaaggtcggatcctcggtgaccaattcggtggatgtccgt
tttgtctgtgcaacgaaccggaatccctgggaagaagtgaagcaggggcgttttcgggaa
gacctgtattatcgtctgcatgtgattccgatcagtttgccgcctctacgtgaacgtggt
gacgatgtcattgaaattgctcatgctttgctgggacatatttcagtggaggaaagtaaa
cggttctgccggttctctcccgaggtacttgaacgcttccgtcagcacgcctggccgggt
aatgttcgagagctgcagaacgtgatccgtaatatcgttgtactcaatgatggtgaagaa
gtactcacacaaatgctcccgccatcggtatcctctgattctggcgccgaaattgcatca
tcgaaaagagagcccacctcttctgtatcagaagccggggcggtgcatcaacatatgggt
acaccgtcagcggtgactcctggccagatagagcctttgtggcaagtagagaagcggacg
attcagcatgcaattgctgcctgtgacgggaatattccgagggcagcaggattactggaa
gtcagtccctctacgatttatcgaaagttacaggcttggcaagaggccgagagtagtcaa
agggagagcgattaa
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