Photobacterium sp. CCB-ST2H9: L4174_013335
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Entry
L4174_013335 CDS
T10200
Symbol
rppH
Name
(GenBank) RNA pyrophosphohydrolase
KO
K08311
putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
phot Photobacterium sp. CCB-ST2H9
Pathway
phot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L4174_013335 (rppH)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phot03019
]
L4174_013335 (rppH)
Messenger RNA biogenesis [BR:
phot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
L4174_013335 (rppH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX
NUDIX_4
Nudt16-like
Motif
Other DBs
NCBI-ProteinID:
UTM56785
LinkDB
All DBs
Position
1:complement(2897743..2898264)
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AA seq
173 aa
AA seq
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MIDGDGYRPNVGIVICNSHGQVFWARRYGQHSWQFPQGGIDEGETPEQAMYRELYEEVGL
TKKDVRILASSRHWLRYKLPKRLVRWDSKPVCIGQKQKWFLLSLECDESKVNMQRGTTPE
FDGWRWVSYWYPVRQVVSFKRDVYRRALKEFAAMAMPFKERKERKSKRKNRRG
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
gtgattgatggcgatggataccgccctaatgtggggatagttatctgtaacagccatggc
caggtattttgggctcgacgatatggacaacactcttggcagtttccgcaaggcggtatc
gatgagggggaaactcctgaacaggccatgtaccgtgaactgtatgaggaagtgggtctg
accaaaaaggacgtcaggattttggcatccagccgccattggctgagatacaagttaccg
aagcgtctggtccggtgggactccaaaccggtttgtatcgggcaaaagcaaaagtggttt
ttgctgagtctggagtgcgatgagtctaaggtgaacatgcagcgtggcaccaccccggaa
tttgatggctggcgttgggtcagttactggtatccggtacgtcaggttgtgtccttcaaa
cgggatgtatatcgccgggcgctgaaagaattcgcggcgatggcgatgccgtttaaggaa
cgtaaggaacggaaatcgaaacgtaaaaacaggcgaggttaa
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