Photobacterium sp. CCB-ST2H9: L4174_015970
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Entry
L4174_015970 CDS
T10200
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
phot Photobacterium sp. CCB-ST2H9
Pathway
phot03420
Nucleotide excision repair
phot03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L4174_015970 (uvrD)
03430 Mismatch repair
L4174_015970 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phot03400
]
L4174_015970 (uvrD)
Enzymes [BR:
phot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L4174_015970 (uvrD)
DNA repair and recombination proteins [BR:
phot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L4174_015970 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
L4174_015970 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
Motif
Other DBs
NCBI-ProteinID:
UTM57236
LinkDB
All DBs
Position
1:complement(3469359..3471530)
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AA seq
723 aa
AA seq
DB search
MDVSLLLDGLNDKQREAVAAPLGNHLVLAGAGSGKTRVLVHRIAWLLRVEEASPFSIMSV
TFTNKAAAEMRGRINALMQGNCAGMWNGTFHGLSHRMLRAHYLDARLPEDFNIIDSDDQM
RLLRRLIKAQNLDEKQWPARQAAWYINGKKDEGLRPSHVETFNDPVEQTWLRVYTAYQEA
CDRAGLVDFAELLLRSFELLKHNKHIREHYQARFKHILVDEFQDTNNIQFAWLRLMAGPE
CHVMIVGDDDQSIYGWRGAKVENIQRFLKEFTSASSIFLEQNYRSTGNILQAANALIANN
NERMGKNLWTEGGEGEKISVYSAFNELDEARFVVGKIKGWQDSGGALNDTAMLYRSNAQS
RVLEEALIQAGMPYRIYGGMRFFERQEIKDALSYLRLIANRDDDTSFERVVNTPARGLGE
RTLDTIRMAARDRGTTLWQASVALLDEKVLAGRAANSLRRFVELVNALEDDTREIQLYQQ
TDEVIRSSGLRAMYEQEKGEKAQARIENLEELVTATRQFEVPEEAGEMSPLAAFLSHAAL
EAGEGQADDFDDAVQLMTLHSAKGLEFPMVFMVGVEEGMFPSFRTSEEPGRLEEERRLCY
VGMTRAMEKLYITHAEMRRLYGKDNFHKVSRFVREIPEEFVEEVRMKAQVSRPSTGGRFS
QTQVNENFNQTGFSLGQRVQHPKFGEGTIINFEGSGAQSRVQVAFNGEGIKWLVTQYAKL
EAM
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcactcttgttagatggtctcaatgacaaacagcgcgaagcggtggcggca
ccgctgggcaatcatttggttctggccggggccggcagcggaaaaacccgggtgctggtg
caccggattgcctggctgctgcgggtcgaagaagcctcgcctttctccatcatgtcggtg
accttcaccaacaaagccgcggcagaaatgcgcggccggatcaacgcgctgatgcaggga
aactgtgccgggatgtggaacgggactttccatggcctgagtcaccgcatgctgcgcgcc
cattatctggatgccaggctgccggaagatttcaatatcatcgattccgatgatcagatg
cgtctgctgcgccgcctgatcaaagcgcagaatctggacgagaaacagtggccagcccgt
caggcggcctggtatatcaacggcaagaaagatgagggactgcgtccgtcgcatgtcgag
accttcaacgacccggtcgagcagacctggctgcgcgtttataccgcctatcaggaagcc
tgtgaccgcgccggactggtcgattttgccgaactcttgctgcgttcatttgaactgctc
aagcacaacaagcacatccgcgaacattatcaggcccgtttcaagcacattctggtagac
gagttccaggataccaacaacattcagtttgcctggctgcgcctgatggcggggccagaa
tgccacgtgatgatcgtgggcgatgacgatcagtcgatttacggctggcggggcgccaaa
gtcgaaaatattcagcgtttcctgaaggaattcaccagtgcgtccagtatcttcctggag
cagaactaccgttcgaccggcaatatcctgcaggcggccaatgcgctcatcgccaataac
aatgagcggatgggcaagaatctgtggaccgaaggcggtgagggcgaaaagatttcagtg
tattccgcctttaacgagctggatgaagcccggtttgtggtcggtaagatcaaaggctgg
caggacagcggcggcgcactgaatgacacggcgatgctgtaccgcagcaatgctcagtcg
cgggtgctggaagaggcgctgattcaggccgggatgccttaccggatctacggcggcatg
cgtttcttcgagcgtcaggaaatcaaggatgcgctgtcttatctgcgcctgattgccaac
cgcgatgatgatacctcgtttgagcgggtggtgaacaccccggcccggggactgggagag
cggacgctggatactatccggatggcggcccgggatcgcggcactactctgtggcaggcc
agtgtcgctttgctggatgagaaagtcctggccggccgggctgccaactcactgcgtcgt
tttgtggaactggtcaatgcgctggaagacgacacccgggagatacagctgtatcagcag
accgatgaagtgatccgttcgtccggactgcgggcaatgtatgagcaggaaaaaggtgag
aaagcgcaggcccggattgaaaacctggaagagctggtgactgccacccgtcagtttgag
gtgccggaggaagccggggagatgagtccgctggctgcgtttctgtcgcatgcggcgctg
gaagctggtgaaggacaggccgatgattttgatgatgcggtacagctgatgacgctgcac
agcgccaaaggactggaatttccgatggtgttcatggtgggcgtggaagaagggatgttc
ccgagtttccgcacctctgaagagccgggacgtctcgaggaagagcgtcgtctgtgttat
gtcggcatgacccgtgcgatggaaaaactttacattacacacgccgagatgcgtcgtctg
tacggtaaggacaatttccacaaagtgtcgcgtttcgtgcgcgaaattccggaagaattt
gtcgaggaagtgcggatgaaggcacaggtctcccgtccgtcaaccggtggtcgattcagc
cagacgcaggtcaacgagaacttcaatcagaccggtttcagcctcgggcagcgggtccag
cacccgaaattcggggaaggcaccatcatcaactttgaaggcagtggtgctcagagccgg
gtgcaggttgctttcaatggtgaaggaatcaagtggttggtgactcagtacgccaaactg
gaagcgatgtaa
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