Photobacterium sp. CCB-ST2H9: L4174_018255
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Entry
L4174_018255 CDS
T10200
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
phot Photobacterium sp. CCB-ST2H9
Pathway
phot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L4174_018255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phot03019
]
L4174_018255
03009 Ribosome biogenesis [BR:
phot03009
]
L4174_018255
Enzymes [BR:
phot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L4174_018255
Messenger RNA biogenesis [BR:
phot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L4174_018255
Ribosome biogenesis [BR:
phot03009
]
Prokaryotic type
rRNA helicases
L4174_018255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UTM60006
LinkDB
All DBs
Position
2:378268..380196
Genome browser
AA seq
642 aa
AA seq
DB search
MQESVTEFRQLELADTILSALDAMGFVAPTPIQAASIPLLLTGTDALGQAQTGTGKTAAF
SLPLLNKINLKQHKPQAIVMAPTRELAIQVAAEIKNLGQNIQGLKVLEIYGGASIVDQMR
ALKSGAHIVVGTPGRVKDLISRDRLHLDEVHTFILDEADEMLKMGFVDDVTWILEQAPES
AQRVLFSATMPPMVKEIVDRFLREPARIDVAGENRTVAKVEQQFWVVKGVEKDEAMIRLL
ETEETDASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSRMEEIQLPMRDDVALARLDRLGKELEEQKESASLEAFVELVEKLQESVEVDATT
LAAILLKRQQGNRPLFYKGPDPMIAAIEREKQRRDRRGERGERGERGERGERGERRERRQ
YNAADWDTYQLHVGREQGVQVKDIVGAIANELGLSKDFIGAIKLAPEHTYVQLPKKMSSD
VVAQLKKLRIRQNEAKAVVVEDNVLREHRRGGREGGNREGGFRRGGNREGGQREGGQREG
GFRNRREGERRFDRNRGGDHRGSFRGERNHGQRQERSKPRFD
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaatctgttacagaatttcgccagttagaactggccgacactattttatccgca
cttgacgcgatgggcttcgtagcgccgacccctattcaggcggcttctattccacttcta
ttaacgggtactgatgctctgggtcaggctcagacaggtaccggtaaaactgcagcattc
tcactgccactgctgaacaagatcaacctgaagcaacataagccacaggcaatcgtgatg
gctccgacgcgtgagctggcgattcaggttgctgctgagatcaagaacctgggtcagaac
atccagggcctgaaagttctggaaatctacggtggtgcatctatcgtagaccagatgcgt
gctctgaaatcaggtgctcacattgttgttggtacacctggtcgtgtaaaagatctgatc
agccgtgaccgtctgcacctggatgaggttcataccttcattctggatgaagccgatgaa
atgttgaaaatgggctttgttgatgacgtgacctggattctggaacaagcaccagaatct
gctcagcgcgtgctgttctctgcaaccatgccaccaatggtgaaggaaatcgttgatcgt
ttcctgcgtgagcctgcacgaatcgacgttgctggtgaaaaccgtacagttgccaaagta
gagcagcagttctgggtagtgaaaggcgtagaaaaagacgaagcaatgattcgtctgctg
gaaactgaagaaactgacgcgtcaatcgtgttcgttcgtacccgtcaggatactgagcgt
ctggctgactggctgtcttcccgcggtttcaaagcagctgcgctgcacggtgacattccg
cagtctctgcgtgaacgtactgttgatcacatcaagcgtggcgtcattgacattctggtt
gcgacggacgttgttgcccgtggtctggacgtgccgcgtattacgcacgtattcaactac
gacattccgtttgatgttgaatcttacatccaccgtatcgggcgtacaggtcgtgccgga
cgtaaaggtaaagcaatcctgctggttcgtacaaaccagatccgtatgctgcgcacgatt
gaacgtgtgaccaagtcacgtatggaagaaattcagcttccgatgcgtgatgatgtcgct
ttagcgcgtctggatcgtctgggcaaagagctggaagagcagaaagaaagcgcaagtctg
gaagcgtttgtcgagctggttgaaaagctgcaggaatctgttgaggttgatgcaacgaca
ctggctgcaatcctgctgaaacgtcagcaaggcaaccgtcctctgttctacaaaggtccg
gatccgatgattgctgcgattgagcgtgagaagcaacgtcgtgaccgtcgtggcgaacgc
ggtgaacgaggcgagcgtggtgaacgcggcgagcgaggcgaacgtcgtgaacgccgtcag
tacaacgctgcggactgggatacctatcagctgcatgttggtcgtgagcaaggtgttcag
gtgaaagatatcgttggtgcaatcgcaaacgaactgggtctgagcaaagacttcatcggt
gcgattaaactggcacctgagcacacctatgttcagctgccgaagaagatgagttctgac
gttgttgcacaactgaagaaacttcgtattcgccagaacgaagcgaaagctgtcgttgtt
gaagacaacgttttacgtgaacatcgccgcggtggacgtgaaggcggcaatcgtgaaggt
ggattccgtcgtggtggaaaccgcgaaggtggtcagcgtgaaggcggccaacgtgaaggt
ggtttccgtaatcgtcgtgaaggcgagcgtcgttttgaccgcaaccgcggtggcgatcat
cgtggcagcttccgtggtgaacgaaaccacggtcagcgtcaggaacgcagcaaaccacgt
ttcgactga
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