Photobacterium sp. CCB-ST2H9: L4174_023445
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Entry
L4174_023445 CDS
T10200
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
phot Photobacterium sp. CCB-ST2H9
Pathway
phot03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
phot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
L4174_023445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phot03000
]
L4174_023445
03400 DNA repair and recombination proteins [BR:
phot03400
]
L4174_023445
Enzymes [BR:
phot01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
L4174_023445
Transcription factors [BR:
phot03000
]
Prokaryotic type
Helix-turn-helix
AraC family
L4174_023445
DNA repair and recombination proteins [BR:
phot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
L4174_023445
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
DUF6233
Motif
Other DBs
NCBI-ProteinID:
UTM59649
LinkDB
All DBs
Position
2:1471493..1472902
Genome browser
AA seq
469 aa
AA seq
DB search
MNLSPSQCQQARLAKDPRYDGLFFTAVKTTGIYCRSICPAPAPKEVNVEYFPTAVEAARA
GYRPCLRCRPDSAPGSPAWLGTGATVKRALRLLDEGTLMNQSLETLASRLGVTDRYLRQL
VTEATGLSPKAYSLYQQCLMAKKLLHETQLPITQIAYASGFHSVRRFNDCFQKQFSLSPS
QLRRQGKAEQSLGQGIRLQLAYRPPYHWQQVHDFYAARLIPGLEWQTDRSYGRTFSHRSG
GDPEQHYQGYFTATHCPEKCCFDVTIQIDHLCGLIPVIQNIRRCLDLDADSERIAEAIRL
AMAASDSPDVQSGIRLPGIWSPFEAGIRAILGQQVSVKAARNLVEKLVQLNPDSGEVHQF
FPSPQQVLETDLQQLGMPQKRRETLQHFARFALSHPAGLDAPEKEVLALPGIGPWTLHYM
RMRGLSDPDIFLSGDLGVKKALLQWDQPINESAAAPWRSYLTLYLWSML
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatcaccttcacagtgtcagcaggcaagacttgccaaagatccccgctatgac
ggactgttttttaccgccgtgaaaacgaccgggatttattgccgctctatctgtcctgcc
ccggcaccgaaagaagtgaatgtggaatactttccgacggctgtggaagcggcacgggcg
gggtatcgtccttgtctgcgttgtcgtccggacagtgctccgggttcaccggcatggctg
ggcaccggcgcaacggtgaaacgcgcgctcagattgcttgatgaagggacgctcatgaat
cagtcgcttgaaactctggcatcccgtttaggggtcacagaccggtatctgcggcagtta
gtgacagaggcaaccggactttcaccgaaagcttacagtttgtatcagcaatgcctgatg
gcaaaaaaattactgcatgaaacgcaattaccgatcacccaaatcgcctatgcgagtggc
tttcacagtgttcgccgctttaatgattgtttccaaaaacagttttcattgtcgccctcg
caactgcgcagacagggcaaagccgagcagtcgctgggacaggggatccggctgcaatta
gcttatcggccgccctatcactggcaacaggtacatgatttttatgcggcgcggctgatt
cccggtctggaatggcaaaccgatcgcagctacggccggacgttttcgcatcggtccggc
ggagatccggaacagcattatcagggatattttacggcgactcattgccctgaaaaatgc
tgttttgatgtgacgattcagatcgatcacttgtgcggcctgattccggtgatccaaaat
atccggcgctgtctggatctggatgcggacagcgaacggatcgctgaagctattcggctg
gctatggcggcctcagattctcctgacgttcaatccggaatccggctgcctgggatctgg
agcccgtttgaagccgggatccgtgcgattttgggtcagcaggtttcagtgaaagcggcc
cggaaccttgtcgaaaaactggtacaactcaatccggacagcggtgaagtgcatcagttt
ttcccttcgccgcagcaagttctggagaccgacttacaacagctcggcatgccacagaaa
cgccgtgaaaccttgcagcattttgcccgttttgcgctgtcgcatccggcgggattggac
gcaccggaaaaagaagtgctggcgctgccaggcatcggtccctggacgcttcactatatg
cgcatgcgtgggttgagtgacccggatatctttttgtcgggggatttaggcgtgaaaaaa
gcgctattgcaatgggatcaacccatcaatgagtcagccgctgcaccgtggcgcagttac
ctcactttgtatttatggagcatgttatga
DBGET
integrated database retrieval system
