Phaeobacter sp. LSS9: D1820_00490
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Entry
D1820_00490 CDS
T05617
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
phq
Phaeobacter sp. LSS9
Pathway
phq03420
Nucleotide excision repair
phq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D1820_00490
03430 Mismatch repair
D1820_00490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phq03400
]
D1820_00490
Enzymes [BR:
phq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1820_00490
DNA repair and recombination proteins [BR:
phq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D1820_00490
MMR (mismatch excision repair)
Other MMR factors
D1820_00490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AXT36616
LinkDB
All DBs
Position
91216..93579
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AA seq
787 aa
AA seq
DB search
MSSFDDIDPYEGISLSARAMAARPMPYLDGLNPAQRAAVECLEGPVLMLAGAGTGKTKAL
TARIVHLLTTGTAKPNEILAVTFTNKAAREMKERVAGMLGQAVEGMPWLGTFHSICVKLL
RRHAELVGLKSNFTILDTDDQIRLLKQLIKAEGIDDKRWPARMLAGVIDDWKNRALTPSK
VPVSDASAYNHRGVDFYAQYQARLKDLNAVDFGDLLLHMVTIFQDNPDVLEQYQRWFRFI
MVDEYQDTNVAQYLWLRLLAGAHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGANVV
RLEQNYRSTEHILSAASGVIRGNSGRLGKELWTEARGGEKVRLIGHWDGEEEARWIGEEI
EAMQRGTRGLAPVDLNNMAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERLEIRDAM
AYFRLVVSADDDLAFERIVNTPKRGLGDKAQQTIQTMARSNGVSLVEGARLAVESGQIKG
KGGNALRQLVTDLARWGRLAGDADMTHMELAETILDESGYTTMWQTDKNPDSPGRLENLK
ELVKALEAFENLQGFLEHVSLIMDNDKQDAAQKVSIMTLHAAKGLEFPAVFLPGWEDGLF
PSQRSMDESGLKGLEEERRLAYVGITRAEEICTISFAGNRRVFGQWQSQLPSRFIDELPE
EHVEVLTPPGLYGGGYGAAAPGGGGGAVRPTIEDRMAAADGYNSPGWKRMQSRAGERGLS
QPKESKSSVIDLTATSAFMVGERVFHQKFGYGAITGIEGDKLEVDFEKAGTKKVVARFVS
AAEDVPF
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgagcagttttgacgatatcgacccctatgaggggatctcgctgtccgcgcgcgccatg
gcagcgcggccgatgccgtatctcgacgggctgaacccggcacagcgggccgccgttgaa
tgcctggagggacctgtgctgatgctggccggggccggcaccggcaagaccaaggcgctg
actgcgcgcatcgtgcatcttctaaccacgggcaccgccaaaccaaacgagatccttgcc
gtgacctttaccaacaaggccgcgcgcgagatgaaggagcgggttgcaggcatgttgggg
caggcggttgaggggatgccctggcttggcaccttccactcgatctgcgtgaaactgctg
cgccgccatgccgaattggtcgggctcaaatccaatttcaccattctggataccgatgat
cagatccgcctgctgaaacagctgatcaaggcggaaggcattgatgacaaacgctggccc
gcgcggatgctggcgggcgtcattgacgattggaaaaaccgggcgctgacgccgtctaag
gtgccggtctccgatgccagtgcctacaaccatcgcggcgtggatttctatgctcagtat
caggcgcggctaaaggatctgaacgcggtcgattttggcgacctactgctgcatatggtc
accatctttcaggataatccggatgtgctggagcagtaccaacgctggttccgctttatc
atggtggacgagtatcaggataccaacgtggcgcagtatctctggctgcggctgctggcg
ggcgcgcataagaacatctgctgcgtcggtgacgatgatcagtcgatctatggctggcgc
ggtgcagaggtgggcaatatcctgcggtttgaaaaggattttcccggcgccaatgtggtg
cggctggaacaaaactaccgctcgaccgaacatattctcagcgcggcctccggtgtgatc
cgtggcaattccggccgtctgggcaaggagctgtggactgaggcgcgcggcggcgagaag
gtccggctgatcggtcattgggacggcgaagaggaagcccgctggatcggcgaggagatt
gaggcgatgcagcgcggcacccgtggtctggcgccggtcgatcttaacaatatggccatc
ctcgtgcgggcctcgcatcagatgcgcgcctttgaggaccgctttctgaccatcggcctg
ccgtaccgggtcattggcgggccacgcttttatgagcggctcgaaattcgcgatgccatg
gcctatttccggctggtggtcagtgctgacgatgaccttgcctttgagcggatcgtcaac
acgccgaagcggggccttggcgataaggcgcagcagaccattcagaccatggcgcgcagc
aatggcgtctccctggtggagggcgcgcggcttgcggtcgaatccggccagatcaagggc
aagggtggcaatgcgctgcgccagctggtcactgaccttgcccgctgggggcgtctggcg
ggggatgcggatatgacccatatggagctggccgaaaccattctggatgaaagcggctac
accaccatgtggcagaccgacaaaaacccggattcgccggggcgtctggaaaacctcaag
gaactggtgaaggcgctggaggcgtttgaaaacctgcaaggcttcctcgaacatgtcagt
ctgatcatggataatgacaaacaggacgccgcccaaaaggtgtcgatcatgacgctacac
gccgccaaagggttggaatttccggctgtgttcttgcccggctgggaggatggcctgttt
ccctcgcagcgctccatggatgaaagcggcctgaagggcctcgaggaggagcgccgcctg
gcctatgtcggcatcacccgggccgaggaaatctgcacgatctcctttgccggcaatcgc
cgcgtctttgggcaatggcagtcacagctgccctcccgcttcattgatgagctgccggaa
gaacatgtggaggtgctgaccccgcccggtctttatggtggcggctacggggctgcggcc
cccggcggtggtggtggggcggtgcgccccacgattgaggatcgcatggcagccgccgac
gggtacaactcgcccggctggaagcgcatgcagtcccgcgccggtgagcgtggtctgtca
cagcccaaggaaagcaaatccagcgtcatcgacctcaccgcgacatccgccttcatggtc
ggggagcgggtgtttcaccagaagtttggctatggggcgatcaccgggatcgaaggcgac
aagctggaggtggatttcgagaaggctggcaccaagaaagtcgtcgcccgctttgtctcc
gcagcggaggacgtgcccttttaa
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