Phaeobacter sp. LSS9: D1820_02775
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Entry
D1820_02775 CDS
T05617
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
phq
Phaeobacter sp. LSS9
Brite
KEGG Orthology (KO) [BR:
phq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phq03016
]
D1820_02775 (rnd)
Enzymes [BR:
phq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
D1820_02775 (rnd)
Transfer RNA biogenesis [BR:
phq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
D1820_02775 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AXT33983
LinkDB
All DBs
Position
554853..556010
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AA seq
385 aa
AA seq
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MKTLTSTEDLQAFCEAAAQHDYVTVDTEFLRERTYYSKLCLVQLAYPGAGNENAVLVDPL
ADGLSLEPLYELFRNESVVKVFHAARQDLEIFWVDAQVFPKPLFDTQVAAMVCGFGEQVG
YETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELKRTGRAR
WVEEELQVLTDPATYDVDPQEAWRRVKTRTNSGKFLAVVRELAAFRETYAKTNNVPRNRV
FKDDALVELASTKPKNASDLGNSRLLLREARKGAIAEGILQAVAKGVECPAGSQPQPDRS
REKLQVNPALADLLRVLLKAKTEASGVAAKLIAPSSDLDAIAAGQRNVPALKGWRLEVFG
ADALRLCNGEIALAAKGQDVKVVTL
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactctgacctctaccgaagacctgcaggccttttgcgaagctgcagcgcagcat
gattatgtcacggtggataccgagtttctgcgagagcggacatattattccaagctatgt
ctggtgcagctggcctatcccggcgccggaaatgaaaacgcggtgctggtggatccgctt
gcggacgggctgtcgctggagccgctgtatgagctgtttcgcaatgaatccgtagtgaag
gtctttcatgccgcgcgtcaggatctggagattttctgggttgatgcacaggtctttcca
aaaccgctgtttgacacacaggttgcggccatggtctgcggctttggtgagcaggtcggc
tatgaaaccttggtgcgcaaaatcgtcaaacaggggttggacaagacgtcgcgcttcacc
gactggtcccgccgccccctgagcgacgcgcagaaaacctatgcgctggcggatgtgacc
catctgcgccagatctatgaatatcttgccgctgagctgaaacgcaccggtcgcgcccgt
tgggtcgaggaagagctgcaggtgctcaccgatccggcaacctatgatgtcgaccctcag
gaggcctggcggcgggtgaaaacccgcaccaactccggcaagtttctggccgttgtgcgc
gaattggcggcgttccgcgaaacctatgccaagaccaacaacgtaccgcgcaaccgggtg
ttcaaggacgacgcgctggttgaactggcctcgaccaagcccaagaacgcctcggatctt
ggaaattcgcggctgctgctgcgcgaagcgcgcaaaggggccatcgccgaggggatcctt
caggcggtggccaagggtgtggagtgcccggcaggatcgcagccgcaacccgatcgcagc
cgtgaaaagcttcaggtgaacccggcgctggccgatttgctgcgggtgctgttgaaggcc
aagaccgaagcctccggcgtcgctgcgaaactgatcgcgcccagttcggatctggacgcg
attgctgccggtcagcggaatgttcccgcgctcaaaggctggcgtcttgaggtcttcggc
gccgatgcgctgcgtctgtgcaatggtgaaatcgccctggcggcaaaggggcaggacgtg
aaggttgtcacgctctga
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