Phaeobacter sp. LSS9: D1820_02855
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Entry
D1820_02855 CDS
T05617
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
phq
Phaeobacter sp. LSS9
Pathway
phq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1820_02855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phq03019
]
D1820_02855
03009 Ribosome biogenesis [BR:
phq03009
]
D1820_02855
Enzymes [BR:
phq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D1820_02855
Messenger RNA biogenesis [BR:
phq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D1820_02855
Ribosome biogenesis [BR:
phq03009
]
Prokaryotic type
rRNA processing factors
D1820_02855
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AXT33999
LinkDB
All DBs
Position
571019..573958
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AA seq
979 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAQRARDDEEDAKPARRQSRSRR
GRTKAADVKSADVVETKDVSPETAENGADIAGMETIDLTDEVAVAETKLADVPEAAQTEA
AADDATAAEPVVEEAVKDASDTPEAQDASAETGEAEGAADTATPEADDTADDAESDDSAD
KDAGADATAKDENIESVADEDDSEDIRPVRKPRPRRYKIQEVIKVRQVLLVQVVKEERGN
KGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKDIAVELDVPTGAGLIVRT
AGAKRTKSEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYSREIDEVL
VEGERGYRIAKDFMKMIMPSHAKNVKNYQDQLPLFARFQVESYLGAMFNPTVQLKSGGYI
VIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMD
ERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTAPCPHCHGTG
LIRSDDSLALSILRQIEEEGTRRRSREVLVRCPVSIANYLMNQKREHIAQIETRYGLSVR
IEGDPHLVSPDFSLEKFKTASRVVPVAAAPVVSVDTSIMDQVDADEANDEADEAETETND
ADVAEVQTAGDEGEGDNKPKRKRRRRRRRKSSGGDGDDSNNAAQADANADDQTASDDAAA
DEADAKAEPAESTDAKEGEGDGEVKKRTRTRTRSRSRKKKTDETVTAEADAPAETDAKAE
PVAEVKEVVEDAKAEDNKPAEAPVESAETPAEAAAEPAALNGDAAAEVPAAAAEAETAAI
SEEAAPSQIVADEATAEDVVADQDTPAAEETAPEAAESQTAEASTEEVETAPEPELATAE
AEPASPPKPKRRGWWSVGS
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaagatgcttattgatgccacccacgcggaagagacccgcgtcgtggtggtc
gacggaaacaaggttgaggaatttgactttgaatccgaaaacaaacgccagcttgctggc
aatatctacctcgcaaaagtaacccgcgtcgaaccgtcgcttcaggcggcttttgtggac
tatggcggcaaccgccatgggttcctcgccttttcggaaatccatcctgactactatcag
attccggtcgccgaccgggaggcgctgatggaagaagaacgcgcctatgccgaggcacag
cgcgctcgtgatgacgaagaagatgccaagcctgccagacggcagtcgcggtcgcgtcgt
ggccggaccaaagctgcggatgtaaaatccgctgatgtggtcgagaccaaggacgtcagc
cccgagaccgctgaaaacggcgctgatatcgcgggtatggaaaccatcgacctgaccgat
gaggtcgcggttgctgagaccaagctggcggacgtccccgaggctgctcaaactgaggcc
gctgctgatgacgcgaccgctgctgagccggttgtggaagaggccgtcaaagatgcctcc
gacacacctgaggcgcaggacgcatccgctgagaccggtgaggccgagggtgcggcagat
acggcgacacctgaggcggacgataccgcagatgacgcggagtctgatgacagtgccgat
aaggacgctggcgcagatgcgaccgcgaaggatgagaatatcgaatccgtcgccgatgag
gatgacagcgaagatattcgcccggtacgcaaaccgcgcccacgtcgttacaaaattcag
gaagtgatcaaggttcgtcaggtcctgctcgttcaggtcgttaaagaggaacgcggcaac
aagggcgctgccctgaccacctatctgtcgctggctggccgttactgcgttctgatgccc
aacaccgcgcgcggtggtggcatctcccgcaagatcaccaatgccgccgaccgcaaaaag
ctgaaggacatcgccgttgaactcgacgtgccgaccggtgccgggctgattgtccgtacc
gcgggcgccaaacgcaccaaatccgagatcaagcgcgactatgaatatctgcagcgcctg
tgggaacagatccgcgagctgacgctgaaatccatcgcgcccgcgaagatctacgaagaa
ggcgatctgatcaaacgctcgatccgcgacctttatagccgcgagattgatgaggtgctg
gttgagggcgaacgcggctaccgcatcgccaaggacttcatgaagatgatcatgccgtcc
cacgccaagaacgtgaaaaactatcaggaccaactgccgctgttcgcgcgcttccaggtc
gaaagctacctcggcgcgatgttcaatccgacggtgcagctgaaatccggtggctatatc
gtgattggcgtcaccgaggcactggtggccatcgacgtgaactccggccgcgccaccaag
gaaggctcgatcgaagaaaccgcgctgaagaccaacctggaggccgccgaagaggtggcc
cgccagctgcgtctgcgcgaccttgccggtcttattgtcatcgacttcatcgacatggac
gagcgcaagaacaacgccgccgtcgaaaagcggatgaaggacaagctgaagactgaccgc
gcccgcatccaggtgggccggatctctggctttggcctgatggaaatgtcgcgtcagcgt
ctgcgtcccggcatgatcgaggcgaccaccgcgccttgcccgcattgccatggtaccggc
ctgatccgctcggacgactcccttgcactgtcgatcctgcgccagatcgaggaggaaggc
actcgccgtcgctcccgcgaggtgctggtgcgctgcccggtcagcattgccaactatctg
atgaaccagaagcgcgagcatatcgcccagatcgaaacccgctacggtctgtccgtgcgg
atcgaaggggacccgcatctggtcagcccggatttctcgcttgagaagttcaagaccgcg
tcccgcgtggtgcctgttgccgcagcgcctgtggtgtccgtcgatacctcgatcatggat
caggttgatgcggatgaggcaaacgacgaggcggatgaggccgagactgaaaccaatgac
gccgacgtcgcagaggtgcagaccgcaggtgatgagggcgagggcgacaataaacccaag
cgcaagcgtcgccgtcggcgtcgccggaaatcctccggtggggacggtgatgacagcaac
aacgcggcgcaggctgatgcaaacgcggacgaccagacagcgtcggatgacgccgctgcg
gacgaggccgacgcaaaggctgagccagcagagagcaccgatgccaaagagggcgagggt
gacggtgaggtgaagaagcgcacccgcacccggacccgctcgcgcagccgcaagaagaag
actgacgagacagtcacagctgaggccgacgccccggcggagacggacgccaaggcagag
cctgtggctgaggtcaaagaggtggttgaggacgcaaaggcggaggacaacaaacctgcc
gaggctccggttgagagcgcagagacgcccgctgaggctgctgcggaacccgcagcgctg
aacggtgacgccgccgcagaggtgcccgccgccgccgctgaagcagagaccgccgccata
tctgaggaggccgcaccgagccagatcgtggcggatgaggccaccgctgaggatgttgtc
gcagatcaggacacccctgccgctgaggaaacagcgccagaggctgccgagtcacagacc
gcagaggcttcgacggaagaggtagagacagccccggaaccggagctggccactgccgaa
gctgaaccggcaagcccgccgaagccgaaacggcgcggctggtggtcggttggcagctga
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