Phaeobacter sp. LSS9: D1820_10160
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Entry
D1820_10160 CDS
T05617
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
phq
Phaeobacter sp. LSS9
Pathway
phq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D1820_10160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phq03021
]
D1820_10160
03400 DNA repair and recombination proteins [BR:
phq03400
]
D1820_10160
Enzymes [BR:
phq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D1820_10160
Transcription machinery [BR:
phq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D1820_10160
DNA repair and recombination proteins [BR:
phq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D1820_10160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
Glyco_hydro_65C
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
AXT35310
LinkDB
All DBs
Position
complement(2128636..2129652)
Genome browser
AA seq
338 aa
AA seq
DB search
MIHKNWAELIKPTQLDVKPGNDPARQATVVAEPLERGFGLTLGNALRRVLMSSLQGAAIT
SVQIDNVLHEFSSVAGVREDVTDIILNLKGVSLRMEVEGPKRLSINAKGPAVVTAGDISE
SAGIEVLNREHVICHLDDGADLFMELTVNTGKGYVSADKNKPEDAPIGLIPIDAIYSPVK
KVSYDVQPTREGQVLDYDKLTMKIETDGSITPDDAVAYAARIVQDQLSIFVNFDEPESAN
RQDDDDGLEFNPLLLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKS
LNEIKEVLSGMGLHLGMDVEDWPPDNIEDLAKKFEDSF
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgatccacaagaattgggctgaactgatcaagccgactcagcttgacgtgaagccgggc
aatgatcccgcacgccaggccaccgtcgtggctgaaccgctggagcgcggctttggtctg
acactgggcaacgcgctgcgccgcgtcctgatgagctcgctgcaaggcgccgccatcacc
tccgtgcagatcgacaacgtcctgcatgaattctccagcgtcgccggcgttcgcgaagat
gtcaccgacatcatcctgaacctcaaaggtgtgtcgctgcgcatggaagtcgaaggcccc
aagcgtctttcgatcaatgccaaaggccccgcagttgtcaccgccggtgacatctccgaa
tccgctggcatcgaagtgctgaaccgtgaacacgtgatctgccaccttgatgatggtgcg
gatctgttcatggaactgaccgtcaacaccggcaagggctatgtctctgctgacaagaac
aagcctgaagatgcgcccatcggcctgatcccgatcgacgccatctattcgccggtcaag
aaggtctcctatgacgttcagccgacccgtgaaggtcaggttctggactacgacaagctg
accatgaagattgaaacagacggctccatcacgcccgatgacgcggtcgcctacgcggcc
cgtatcgtgcaggaccagctgtcgatcttcgtcaacttcgacgaaccggaatcggcaaac
cgtcaggacgacgatgatggtctcgagttcaacccgcttctgctgaagaaagtggacgag
ctggaactgtctgtccgttcggcaaactgcctgaagaacgacaacatcgtctacatcggc
gatctcatccagaagaccgaagcagaaatgctgcgcacgccgaacttcggccgcaagtcg
ctgaacgagatcaaagaagtgctgtcgggcatgggtctgcacctcggcatggacgtcgag
gactggccgccggacaacatcgaagatctggccaagaagttcgaagacagcttctaa
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