Phaeobacter sp. LSS9: D1820_10375
Help
Entry
D1820_10375 CDS
T05617
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
phq
Phaeobacter sp. LSS9
Pathway
phq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D1820_10375 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phq03021
]
D1820_10375 (rpoC)
03400 DNA repair and recombination proteins [BR:
phq03400
]
D1820_10375 (rpoC)
Enzymes [BR:
phq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D1820_10375 (rpoC)
Transcription machinery [BR:
phq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D1820_10375 (rpoC)
DNA repair and recombination proteins [BR:
phq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D1820_10375 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
AXT35351
LinkDB
All DBs
Position
complement(2157516..2161757)
Genome browser
AA seq
1413 aa
AA seq
DB search
MNQELTNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEYMDAQDQFGMDAFT
ANIGAEAIREMLAAIDLEAEAEHLRAELAEATGELKPKKIIKRLKVVESFLESGNRPEWM
VMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTLEREGMPGEGKIFGTIDEVQHAL
DAGEVHLHTKITARITQIDEEGNEVLKRFETTPGRVRLGALLPKNVKAPFELVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDTKWTLVDETRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTDAMMGTISADKRNEAGAVMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRDRDCGTEAAITAEAAVNDGEVVASLGERILGRV
AAEDIKKPGTEEIIVAVGQLIDERMADAVEEAGVQSTRIRSPLTCEAEEGVCAQCYGRDL
ARGTQVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQEGKIVFEMPQ
TLENANGETLVVGRNMKLIIQDEHGEERASHKLGYGSKLFVKEGQTVARGDKLFEWDPYT
LPIIAEKPGTAKYVDLVSGIAVRDETDEATGMTQKIVIDWRAAPKGSDLKPEIILVDGDG
EPVRSDAGNPLTYPMSVDAILSVEEGQQIMAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGRDYKNKRRISIEPADESMEPVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILSIMGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ISDSGDTTLLKGEHVDKQEFDTANEKALARGKRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTGGATQRVRNIAQSRDNVVLDARRE
EAEAAAALAAPSMDDVATEDSLDNLVETPESRD
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacgaataatccgttcaacccgctcacgccgccgaaggtctttgat
gagatcaaggtgtcgctggcatcgccagagcggatcctgtcgtggtcctacggcgagatc
aaaaagccggaaaccatcaactaccggacgttcaaacccgaacgtgacggtctcttctgc
gcgcgcatctttggcccgatcaaagactacgaatgtctgtgcggcaaatataagcgcatg
aagtatcgcggcgttgtctgcgaaaaatgcggtgtggaagtcaccctgcaaaaggtccgc
cgcgagcggatgggccacatcgaactggcgtcgccggttgcgcatatctggttcctcaag
tcgctgccgtcgcgcatcggcctgatgctggacatgactctgcgcgatctggagcgggtt
ctgtattttgaaaactacgttgtcatcgagccgggtctgaccgacctcacctacggccag
atgatgaccgaagaagaatacatggacgcccaggaccagttcggcatggacgccttcacc
gccaacatcggcgctgaagcgatccgtgaaatgctggccgcgatcgatctggaagccgaa
gccgagcatctgcgcgcagagctggcggaagccacaggcgagctgaagcccaagaagatc
atcaagcgcctgaaggtggttgaaagcttcctggaatccggcaaccgcccggaatggatg
gtcatgaccgtcattcccgtgatcccgccggaactgcgcccgctggttccgctggatggc
ggccgttttgcgacgtctgacctgaatgacctctatcgtcgtgtgatcaaccggaacaac
cgtctgaagcgcctgattgagctgcgcgcacccgacatcatcgtccgcaacgaaaagcgg
atgttgcaggaatcggttgacgcgctgttcgacaacggccgtcgtggccgcgtgatcacc
ggcgccaacaagcgtccgctgaaatcgctgtctgacatgctgaaaggtaagcagggtcgc
ttccgtcagaaccttttgggtaagcgggtcgacttctccggtcgttcggtcattgtgacc
ggccccgagctgaagctgcaccaatgcggtctaccgaaaaagatggcgctcgaactgttc
aagcccttcatctactcgcgtctggaggccaaaggtctgtcctccaccgtgaagcaggcg
aagaagctggtcgaaaaagagcgccccgaagtgtgggatatcctcgatgaggttattcgc
gaacatccggtgatgctgaaccgtgcgccgacgctgcaccgtcttggcattcaggcgttt
gaacccacgctgattgaaggtaaagctattcagctgcacccgctggtctgctcggcgttc
aacgcggacttcgacggtgaccagatggcggttcacgttccgctgagccttgaggcccag
ctggaagcgcgtgttctgatgatgtccacgaacaacgttctgtcgcccgccaacggcgcg
ccgatcatcgttccgtcgcaggatatgatcctgggtctctactatgtgaccctggaacgt
gaaggcatgcccggtgaaggcaagatctttgggaccatcgacgaggttcagcatgcgctg
gacgccggtgaagtgcatctgcacaccaagatcaccgcgcggatcactcagatcgacgaa
gaaggcaacgaggttctcaagcgttttgagaccaccccgggccgggtccgtctgggcgcg
ttgctgccgaaaaacgtcaaggcaccgtttgagctggtcaaccgtcttctgcggaagaaa
gaggttcagcaggtcatcgacaccgtctaccgttactgcggtcagaaagagtcggtgatc
ttctgtgaccagatcatgaccatgggtttccgtgaagcgttcaaggcgggcatttcgttc
ggcaaggacgacatggtgatccccgacaccaaatggacgctggtcgatgagacccgcgat
caggtgaaggacttcgaacagcagtacatggacggcctgatcactcagggcgaaaagtac
aacaaagttgtcgatgcctggtcgaagtgtaacgacaaagtcaccgatgcgatgatgggc
accatctccgcagacaagcgcaacgaggctggcgccgtgatggaaccgaactcggtttac
atgatggctcactccggtgcgcgtggctcggtcacccagatgaaacagctgggcgggatg
cgcggcctgatggcgaagccgaatggcgacatcatcgagaccccgatcatctcgaacttt
aaagaaggtctgaccgttctcgagtacttcaactcgacacacggtgcccgtaagggtctg
tcggataccgctctgaagaccgcgaactcgggttacctgacccgtcgtctggttgacgtg
gcacaggattgcatcgtgcgcgatcgtgactgtggcactgaggccgcgatcactgctgaa
gcagcggtcaacgacggtgaggtcgtggcgtcgcttggcgagcgtattctgggccgtgtt
gcggctgaggatatcaagaagccgggcaccgaggagatcatcgtggccgttggccagttg
atcgacgagcgcatggcagatgcagtggaagaggccggcgttcagtcgacccgtatccgc
tcgccgctgacctgtgaggccgaagaaggcgtttgcgcccagtgctatggccgtgacctg
gcccgtggtacgcaggtgaacaccggtgaagctgtcggcatcatcgccgcgcagtcgatc
ggtgaacccggtacacagctgacgatgcggaccttccacatcggcggcgttgcacagggt
ggccagcagtccttcctcgaagcctcgcaagagggcaagatcgtcttcgagatgccgcag
accttggaaaacgccaacggcgagaccctggttgttgggcggaacatgaagctgatcatt
caggacgagcacggggaagagcgcgccagccacaagctgggttacggctccaaactgttc
gtcaaggaaggccagaccgtggcccgtggcgacaagctgttcgaatgggatccctacacc
ctgccgatcatcgccgagaaacccggtaccgcaaaatatgtggacctggtctccggtatc
gctgtgcgggatgagaccgacgaagccaccggcatgacccagaagatcgtgatcgactgg
cgtgcggctcccaaaggctctgacctcaagccggaaatcattctggtggatggcgatggc
gagccggtgcgcagcgatgcgggcaacccgctgacctatccgatgtccgtggacgccatc
ctgtcggtcgaagaaggccagcagatcatggcaggtgacgttgtcgcgcgtatcccgcgc
gaaggcgccaagaccaaggacatcaccggtggtctgccgcgggttgcggaactgttcgag
gcccgtcgtcccaaggatcacgcgatcatcgccgaaatcgatggttacgtgcgctttggc
cgcgactacaagaacaagcgccgcatctcgatcgagcctgctgatgagtcgatggagccc
gtcgaatacatggtgcccaagggcaagcacattccggttcaggaaggtgacttcgtccag
aagggtgactacatcatggacggcaacccggcgccgcatgacatcctgtccatcatgggt
gtcgaggctctggccaactacatgatcgatgaggttcaggacgtctatcgcctgcagggt
gtgaagatcaacgacaagcacatcgaggtgattgttcgccagatgctgcagaagtgggag
atctccgactctggtgacacaacgctgctgaaaggtgagcatgtggacaagcaggagttc
gacaccgccaacgagaaggcgctggcccgtggcaagcgtcctgctcagggcgagccgatc
ctcttgggtatcaccaaggcatcgctgcagacccgctccttcatctcggcggcctccttc
caggagaccacccgtgtcctcaccgaagcatcggtacagggcaagaaggacaagctggtt
ggcctgaaagagaacgtcatcgtgggtcgcctgatcccggccggtaccggtggcgccacc
cagcgggtgcgcaacatcgcccagtcgcgtgacaatgtcgtccttgacgcccgccgcgag
gaggccgaagccgccgccgcactggctgccccgtcgatggatgacgtcgccaccgaggat
agcctcgacaatctggtggaaaccccagagagccgcgactga
DBGET
integrated database retrieval system
