Phreatobacter cathodiphilus: C6569_04555
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Entry
C6569_04555 CDS
T05356
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
phr
Phreatobacter cathodiphilus
Pathway
phr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6569_04555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phr03019
]
C6569_04555
03009 Ribosome biogenesis [BR:
phr03009
]
C6569_04555
Enzymes [BR:
phr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C6569_04555
Messenger RNA biogenesis [BR:
phr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C6569_04555
Ribosome biogenesis [BR:
phr03009
]
Prokaryotic type
rRNA processing factors
C6569_04555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AVO44391
UniProt:
A0A2S0N8X7
LinkDB
All DBs
Position
complement(936526..939417)
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AA seq
963 aa
AA seq
DB search
MANKMLIDAAHPEETRVVVVRGNRVEEFDFESQSRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADREALLADEARQHREEDDEDNGRGRRSERPGKGGNG
RRRRRNERRPRNEAAEAKTSESVTGEAELEADTETGIEAGAPETTAEAAGEAPAAEAAAM
AEASDAVEAAPAEIRDTASTDDAADGEAAGSDDDEDEDDGEDEDGNGDEENGEGPREEDQ
VESVGAGDAYEDMPDRTFRPRKQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAG
RYSVLMPNTARGGGISRKITNAVDRKRLKAIAGDLEVPDGMGVILRTAGANRTKTEVKRD
FEYLLRMWETVRETTLKSHAPTLVYEEGSLIKRSIRDLYNKDIDEVLVAGEEGYKEAKDF
MRMLMPSHAKNVKPYREPQPLFARSGVEAQLDAMFSNTVQLKSGGYIVINPTEALVAIDV
NSGRSTREHNIEDTALRTNLEAADEVARQLRLRDLAGLIVVDFIDMDEGRNNRAVEKRMK
DALKNDRARIQVGRISHFGLLEMSRQRIRTGVLESSTETCPTCGGLGHVRSVSSVALHLL
RSVEEQLLRAATHNVIVRTRTAVALYVLNNKRAHLHELETRFRVSVDISADETITGQHMF
AIEKGAQVHTPETAYKPPAALPVPVEPEDLVEEEFEEDEEIVEAEAEAGEGRERSRSGEP
GEAESEESSERRRKRRRRRRRGRNGEREDGERGGQFADDETSAQGEDAEGEDDEDAAVTA
EGEAGSDEAGEAERRRRRRGRRGGRRSRHEGEAGNGSAEAMDAAEEAPPAGDDPFPVPAE
AEAAGEIEAGRGPRHAGRRGRTPRAVAITEDGAEPAPAAAPSEPEAAAAEPPPRRRRTPP
AEPIVVDAPAPATVAAPAPEPEPAPVAEPVKRRRTPDPEPVDTIQPAAASARRAGWWNRK
GAE
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaagatgctcatcgatgccgcccacccggaagaaacccgggtcgtggtggtc
cgtggtaatcgcgtcgaggaattcgatttcgagagccagtcccgcaagcagctgcgcggc
aatatctatctcgccaaggtgacacgggtcgaaccgtcgctgcaggcggccttcatcgaa
tatggcggcaaccgccatggctttctcgccttctccgagatccaccccgactattaccag
attccggtcgccgaccgcgaggcgctgctcgccgacgaggcgcgccaacaccgcgaggaa
gacgacgaggacaacggccgcggccggcgttccgagcggccgggcaagggcggcaacggc
cgccgtcgccgccgcaacgagcgtcgtccccgcaacgaggccgccgaggcgaagacctcg
gagagcgtgaccggcgaggccgagctcgaggccgataccgaaaccgggatcgaggccggc
gctcccgagacgacggccgaggccgcgggcgaggccccggccgccgaggccgccgccatg
gccgaagcctcggacgccgtggaggccgctccggccgagatccgtgacaccgcttccacc
gacgatgcggccgacggcgaggccgccggaagcgacgacgacgaggacgaggacgacggt
gaggacgaggacggcaacggcgacgaggagaacggcgagggtccgcgcgaggaggaccag
gtcgaatccgtcggcgcgggcgacgcctacgaggacatgccggaccgcaccttccggccg
cgcaagcagtacaagatccaggaagtgatcaagcgccggcaggtcatgctggtgcaggtc
gtcaaggaggagcgcggcaacaagggcgcggcgctgaccacctatctctcgctcgccggc
cgctattcggtgctgatgcccaacacggcgcgcggcggcggcatttcccgcaagatcacc
aatgcggtcgaccgcaagcggctgaaggccatcgccggcgacctcgaggttccggacggc
atgggcgtgatcctgcgcacggccggcgccaaccgcaccaagaccgaggtgaagcgcgac
ttcgaatatctcctgcgcatgtgggagacggtgcgcgagaccaccctcaagtcgcacgcc
ccgacgctggtctacgaagagggctcgctgatcaagcgctccatccgcgacctctacaac
aaggacatcgacgaggtcctggtcgccggcgaggagggctacaaggaggccaaggacttc
atgcgcatgctcatgccgagccatgcgaagaacgtgaagccctatcgcgagccgcagccg
ctcttcgcccgttcgggcgtcgaggcgcagctcgacgcgatgttctccaacacggtgcag
ctcaagtccggcggctacatcgtcatcaatccgacggaagcgctggtcgccatcgacgtg
aactccgggcgctcgacccgcgagcacaacatcgaggacacggcgctccgcaccaacctc
gaggcggccgacgaggtcgcccgccagctgcgtctgcgcgatctcgcgggcctcatcgtc
gtcgacttcatcgacatggacgagggccgcaacaaccgcgccgtcgaaaagcgcatgaag
gatgcgctgaagaacgaccgggcgcgcatccaggtcggccgcatctcgcatttcggcctg
ctcgagatgagccgccagcgcatccgcaccggcgtgctcgaaagctcgaccgagacctgc
ccgacctgcggcggcctcggccatgtgcgctccgtctcctcggtggcgctgcatctgctg
cgctcggtcgaggagcagctgctgcgcgcggcgacgcacaacgtgatcgtgcgcacgcgc
acggcggtggcgctctacgtgctcaacaacaagcgcgcccacctgcacgagctggaaacg
cgcttccgggtgagcgtcgacatcagcgccgacgagaccatcaccggccagcacatgttc
gccatcgagaagggcgcccaggtgcacacgccggagaccgcctacaagccgccggccgcc
ctgcccgtccccgtcgagcccgaagacctcgtcgaggaggagttcgaggaggacgaggag
atcgtcgaagcggaagccgaagccggcgagggccgcgagcgttcgcgctccggcgaaccg
ggcgaggccgagagcgaggagagcagcgagcgtcgccgcaagcgccgccgccgtcgccgt
cgcggccgcaacggcgagcgcgaggacggtgagcgcggcggccagttcgccgacgacgag
acctcggcccagggcgaggacgccgagggcgaggacgacgaggacgccgccgtgaccgcc
gagggcgaggccggctccgacgaggcgggcgaggccgagcgccgccgccgccgccgcggc
cgccgtggcggacgccgttcgcgccatgagggtgaggccggcaacggcagcgccgaggcc
atggacgccgccgaggaggcgccgcccgcgggcgacgatcccttccccgtgccggccgag
gcggaagccgccggcgagatcgaagcaggacgtggaccgcgccatgcgggtcgccgcgga
cgcaccccgcgtgcggtcgcgattaccgaggacggtgccgagccggcgccggccgcagcg
ccgagcgagccggaggccgccgcggccgaaccgccgccgcgccgtcgccgcacgccaccg
gcggagcccatcgtggtggacgcgcctgcccccgccaccgtcgccgcccccgcccccgag
ccggagcccgcccccgtggcggaaccggtgaagcggcgcaggacgcccgaccccgagccg
gtggacacgatccagccggcggccgcctccgcccggcgggccggatggtggaaccgcaaa
ggcgccgagtaa
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