Phreatobacter cathodiphilus: C6569_06250
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Entry
C6569_06250 CDS
T05356
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
phr
Phreatobacter cathodiphilus
Pathway
phr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C6569_06250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phr03021
]
C6569_06250
03400 DNA repair and recombination proteins [BR:
phr03400
]
C6569_06250
Enzymes [BR:
phr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C6569_06250
Transcription machinery [BR:
phr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C6569_06250
DNA repair and recombination proteins [BR:
phr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C6569_06250
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
AVO44692
UniProt:
A0A2S0N981
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All DBs
Position
1282398..1283414
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AA seq
338 aa
AA seq
DB search
MIQKNWQELIKPEKLHIVPGDDPKRVATATAEPLERGFGVTLGNALRRVLLSSLQGAAVS
AVQIDGVLHEFSSIPGVREDVTDIVLNIKDIAIKMQGDGPKRMVVRKEGPGVVTAGDIQT
VGDVVILNPELVICTLDEGASIRMEFTVDTGKGYVPSEKNRAEDAPIGLIPVDSLFSPVK
KVSYQVSPTREGQVLDYDKLTLTVETNGSVSPEDAIAYAARILQDQLEIFVNFEEPRKEV
VQESIPDLAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKS
LNEIKEVLAQMGLHLGMEVTGWPPENIEELAKRFEDHY
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
gtgatccagaagaactggcaggaactgatcaagccggagaagctccacatcgttcccggc
gatgacccgaagcgcgtggcgaccgccacggccgagccgctcgagcgcggtttcggcgtc
accctcggcaacgccctgcgccgcgtcctcctgtcctcgctccagggcgctgccgtctcg
gccgtccagatcgacggcgtcctccacgagttctcgtccattccgggcgtccgcgaggac
gtcaccgacatcgtcctgaacatcaaggacatcgcgatcaagatgcagggcgacggcccg
aagcgcatggtcgtgcgcaaggagggcccgggcgtggtcaccgccggcgacatccagacc
gtcggcgacgtggtcatcctcaaccccgaactggtgatctgcaccctcgacgagggcgcc
tcgatccgcatggagttcaccgtcgacaccggcaagggctatgtgccctccgagaagaac
cgcgccgaggatgcgccgatcggcctcatcccggtcgacagcctcttctcgccggtcaag
aaggtgtcctaccaggtctcgccgacccgcgagggccaggtgctcgactacgacaagctg
accctgacggtggagaccaacgggtcggtctcgcccgaggacgcgattgcctatgcggcg
cgcatcctgcaggaccagctcgagatcttcgtgaacttcgaggagccgcgcaaggaagtc
gtccaggaatcgatcccggatctcgccttcaacccggcgctcctgaagaaggtcgacgag
ctcgagctctcggtccgctcggcgaactgcctgaagaacgacaacatcgtctacatcggc
gacctgatccagaagaccgaggcggaaatgctccgcactccgaacttcggccgcaagtcg
ctgaacgagatcaaggaagtgcttgcccagatgggcctccacctcggcatggaggttacg
ggctggccgccggagaatatcgaagagctcgccaagcgcttcgaggaccattactga
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