Phreatobacter cathodiphilus: C6569_07330
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Entry
C6569_07330 CDS
T05356
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
phr
Phreatobacter cathodiphilus
Pathway
phr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C6569_07330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phr03400
]
C6569_07330 (mfd)
Enzymes [BR:
phr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C6569_07330 (mfd)
DNA repair and recombination proteins [BR:
phr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C6569_07330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_16
AroM
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AVO44888
UniProt:
A0A2S0N9R5
LinkDB
All DBs
Position
1499258..1502773
Genome browser
AA seq
1171 aa
AA seq
DB search
MAKRSPADVVASRGRLTLAGVPQGYDALVVADLARQLHAKGDQASPELLVICRDGPRMQA
METALAFFAPGIEILTVPAWDCQPYDRASPNGAVMARRMLTLSRLARTTGRATPAIVLTT
VNAALQRVPARAVLAQQSLSAAPGNVIAMTDLQSWLETNGYLRTSTVREVGEYAVRGGIL
DLFAPGLDAPIRLDFFGDTLESIRSFDPETQRTTGNLRRLDLVPTAEMQITTETMSKFRL
AYVRAFGGSTKGDALYEAVSEGRRHPGVEHWLPLFHDRLDTLFDYLPDAGMVLDAQVEEA
ARERLTTIADYYDARKTALEQDASASYKPLPPDALYLSPADWDRRSGGEAVVKLSPFALA
GASDGALIDLGGRRGRSFAAERADENANVFDAVTAHVAALRKDKKRVLVAAWSEGSRERL
QPILEDHGLKALRPVASWSSAQALRGDEIALAVLGVEEGFETPDFAVVGEQDILGDRLVR
AQKRRKRAQDFLSDVTSLSAGDLVVHVDHGIGRFVGLKTVTAAGAPHDCVELHYAGGDKL
FLPVENIELLTRYGSEDAEAQLDKLGGGAWQARKARLKKRILEMAAGLIKIAAARALREA
PKLVAPDGAYDEFAARFPYDETDDQAGAIDSVLEDMGSGRPMDRLVCGDVGFGKTEVALR
AAFAAVMSGKQVAVVVPTTLLARQHYKTFAERFKGLPVTVAQASRMVGSADLAAAKKGLA
DGTVDIVVGTHALLGKTISFKDLGLVIVDEEQHFGVGHKERLKELRAEVHVLTLTATPIP
RTLQLAMTGVRDLSIIATPPVDRLAVRSFVTPFDPLIIREALLRERYRGGQAFFVCPRIE
DLAEAEAFLREHVPEAKFIVAHGQMAAGDLEDRIGAFYDGKVDILLSTTIVESGLDIPRA
NTLIVWRADMFGLAQLYQLRGRVGRAKTRAYALFTLPEKKPVTPQAERRLKVLQSLDTLG
AGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQQMLEEAVSMMKAGLVEETVEDKWS
PQITVGTPILIPETYVEDLGLRLQLYRRLGDLDTDEAIDAFAAEMIDRFGPLPEEVQHLV
KVAVIKAYCRRANVEKVDSGPRGIVMTFRDGKFANPAGLVRYIGEQGSLAKVRPDQKIVF
IRDWPKAEDRLKGTAVILRNLVKIAETKKAA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacgttctcccgccgacgtcgtcgcctcgcgcgggcggttgaccctcgcgggc
gtgccgcagggctacgacgctctcgtcgtcgccgacctcgcccgccagctccatgccaag
ggcgaccaggcctcgcccgagctgcttgtgatctgccgcgacggcccgcgcatgcaggcc
atggagacggcgctggccttcttcgcgccgggcatcgaaatcctcaccgtccccgcctgg
gactgccagccctatgaccgcgcttcccccaacggcgccgtcatggcgcggcggatgctg
accctgtcgcgcctcgcccgcaccaccggccgcgcgaccccggccatcgtgctgaccacg
gtcaacgccgcgctgcagcgggtgcccgcgcgcgcggtcctcgcgcagcaatcgctgtcc
gcggcgccgggcaacgtcatcgccatgaccgacctgcagtcctggctggagaccaacggc
tacctgcgcacctcgaccgtgcgcgaggtcggcgaatatgccgtgcgcggcggcattctc
gacctcttcgcgccgggcctcgacgcgcccatccgcctcgacttcttcggcgacacgctg
gagtcaatccgctccttcgacccggagacccagcgcaccaccggcaatctgcgccgcctc
gacctcgtgccgacggcggaaatgcagatcaccaccgagaccatgtcgaagttccggctc
gcctatgtgcgggccttcggcggctcgaccaagggcgacgcgctctacgaggcggtctcc
gaggggcgccgccaccccggcgtggaacactggctgccgctgttccacgaccgtctcgac
acgctcttcgactatttgcccgatgccggcatggtcctcgacgcccaggtggaggaagcg
gcgcgcgagcgtctgaccacgatcgccgactactacgatgcgcggaagacggcgctcgag
caggacgcctccgcctcctacaagccgctgccgccggacgcgctctatctgtcgcccgcg
gactgggaccgccggagcggcggcgaggccgtcgtgaagctctcgcccttcgcgctcgcc
ggcgcctccgacggcgccttgatcgacctcgggggccggcgcggccggtccttcgcggcg
gagcgggccgacgagaacgccaatgtcttcgacgccgtgacggcccatgtggcggcgctg
cgcaaggacaagaagcgcgtcctggtcgccgcctggtcggaggggtcgcgggaacggctc
cagccgatcctcgaggaccacgggctgaaggcgctgcgaccggtggcgagctggtcctcc
gcccaggccctgcgcggcgacgagatcgcgctggccgtgctcggcgtcgaggagggcttc
gagacacccgactttgccgtcgtcggcgaacaggacattctcggcgaccgtctcgtccgt
gcccagaagcggcggaagagggcgcaggacttcctctccgacgtcacgagcctgtcggcc
ggcgatctcgtcgtccatgtcgaccacggcatcggccgcttcgtcggcctgaagacggtc
actgcggcgggcgcgccgcacgactgcgtcgagctgcactatgccggcggcgacaagctc
ttcctgccggtggagaacatcgagctcctcacgcgctacggctcggaggacgcggaggcc
cagctcgacaagctcggcggcggcgcctggcaggcccgcaaggcccgcctcaagaagcgc
atcctcgaaatggccgccggtctcatcaagatcgccgcggcccgtgccctgcgcgaggcg
ccgaagctggtggcgcccgacggcgcctatgacgagttcgccgcccgtttcccctatgac
gagacggacgatcaggccggcgccatcgattccgtgctggaggacatgggttccgggcgg
ccgatggaccggctcgtctgcggcgacgtcggcttcggcaagaccgaggtggcgctgcgc
gccgccttcgccgccgtcatgagcggcaagcaggtggcggtggtggtgccgacgacgctt
ctcgcccggcagcactacaaaacctttgccgagcgcttcaaggggctcccggtgacggtc
gcccaggcttcccgcatggtcggctccgccgatctcgccgccgccaagaagggcctggcg
gacgggacggtcgacatcgtcgtcggcacccacgccctgctcggcaagaccatttccttc
aaggatctcggcctcgtcatcgtcgacgaggagcagcatttcggcgtcggccacaaggag
cggctcaaggagctgcgcgccgaggtccatgtgctgaccctgaccgcgacgccgatcccg
cggacgctccagctcgccatgaccggcgtgcgcgacctgtccatcatcgcgacgccgccg
gtcgaccgcctcgcggtccgctccttcgtgacgcccttcgacccgctgatcatccgcgag
gccctgctgcgcgaacgctaccgcggcggccaggccttcttcgtctgcccgcgcatcgag
gatctggcggaggccgaggccttcctgcgcgagcacgtgccggaggcgaagttcatcgtc
gcccacgggcagatggcggccggcgacctcgaggaccgcatcggcgccttctacgacggc
aaggtcgacatcctgctctccaccaccatcgtcgaatccggcctcgacatcccgcgcgcc
aacacgctgatcgtctggcgcgccgacatgttcggcctcgcccagctctaccagctgcgc
ggccgcgtcggccgggccaagacccgcgcctatgcgctcttcacgctgcctgagaagaag
ccggtgacgccgcaggccgagcgaaggctgaaggttctccagtctctcgacacgctcggc
gcgggcttccagctcgcctcccacgacctcgacatccgcggtgccggcaacctcctcggc
gacgagcagtccggccacatcaaggaggtcggctacgagctctaccagcagatgctggag
gaggcggtgtcgatgatgaaggccggcctcgtcgaggagacggtcgaggacaagtggtct
ccgcagatcacggtgggcacacccatccttatccccgagacctatgtggaggacctcggc
ctccgcctgcagctctaccgccggctcggcgacctcgacaccgacgaggcgatcgacgcc
tttgccgccgagatgatcgaccgcttcggcccgctcccggaggaggtgcagcacctcgtc
aaggtggcggtgattaaggcctattgccgcagagccaacgtcgagaaggtcgattcgggg
ccgcgcggcatcgtcatgaccttccgggacggcaaattcgccaatcccgccgggttggtg
cgctatatcggcgagcagggctcgctggccaaggtccgccccgaccagaagatcgtcttc
atccgcgactggccgaaggccgaggaccgcctgaagggaacggctgtcatcctgcgcaac
cttgtgaagatcgccgagacgaagaaggcggcgtga
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