Paenarthrobacter sp. R1: QN084_00570
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Entry
QN084_00570 CDS
T10646
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
phrz Paenarthrobacter sp. R1
Pathway
phrz03018
RNA degradation
Brite
Enzymes [BR:
phrz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QN084_00570
Messenger RNA biogenesis [BR:
phrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QN084_00570
Ribosome biogenesis [BR:
phrz03009
]
Prokaryotic type
rRNA processing factors
QN084_00570
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WIV31165
LinkDB
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Position
complement(118961..122350)
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AA seq
1129 aa
AA seq
DB search
MDNDQVVAVNDGAEPAEAAEAPKKTTRARTARAPRKTAAKAAADSAAEPVTAEEAADAAA
AVQAPDAAAGAPATEEPAAQAPARRSRARKKVEPAEPLPGFDGTPAPDAQAETTEPAVAT
EPAVATEPAGSSAEAADAAATAAEPAEAQAEAAPEKPVRRRRTAKAKVEAQQAESAEAAA
EATAGATDAEPVAETSQEAPAATAEEHAETDAAGSSSLFLEPVSITSMIFQAPDLSAVVR
PAEEKDAEADDETEASGEAESEDAGSRRRRRSRGRRGRRGNERDDNDAEGSSETEDDEAP
AAEALEEGVTSRRRRRRRRGDQDLELTGGSDDDPPNTVTRVRAPRPITETAASNRVASVK
GSTRLEAKKQRRRESRETGRRRQVITEAEFLARRESVDRQMIVRQRDDRIQIGVLEDGVL
AEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVNWDAVNLEGQP
RRIENALKSGDSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGSMTGISRKLPDVER
NRLKRILKDRLPENAGVIVRTAAEGASEEELTHDINRLRAQWEGIESQASSTKVLAPELL
YGEPDLTIKVVRDVFNEDFSKLIVSGDEAWDTIEAYVTYVAPDLVGRLEKWTKDQDIFAA
WRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAA
EEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQM
TRKRMGTGLLEVFGEQCEHCAGRGVVTHDEPVEHRRANVVAAEQHRSHTEAQQPSQRSER
KRRRGKGGNQAPEATTPVQPAAAPTAPAPAESVDPAQKAKAEATRAALATIAAAAHAAHL
HDDEVHRAEEAARAAGKAEAGQSGPAQADPARKAPAQSAPAQGDAAQAPAQGGQTQGSTP
AETAAREGRPAPVLRFGGEEVALPFVEHHDEPAKKPAMSLDLLAEAFSHLGGTPEVVPGS
EVAGSEKDAPGNVESADAPVSADALPATSAGTEPVESRSGARGRRGRRNRSASRAQGAAN
ETNVEHHDVRAATGGGTSHEAKAPAEPAKKPTPASEPIILGVGVPASEL
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atggataatgaccaggttgtagccgtaaatgatggggcggaacccgcggaagcagcggag
gcgcccaagaaaaccacccgcgccaggaccgcccgcgcgccccgcaagactgccgccaag
gcagctgccgacagtgcggcagagccggtgaccgccgaagaagctgccgatgccgctgcg
gctgtccaggcccccgatgccgctgccggcgcaccggctactgaagaaccagctgcgcag
gctccggcacgtcgaagccgtgcccgcaagaaggttgagcctgctgagccccttcccggc
ttcgatgggacccctgcgccggacgcgcaggcagagaccacagaaccggcagtggccaca
gaaccggcagtggccacagaaccggcaggatcttccgctgaggccgcagacgcagcagca
accgccgctgagcccgcagaagcgcaagccgaggctgcaccggaaaagccggtccgccgt
cgtcgtactgcaaaagcaaaggttgaagctcagcaggccgaaagcgccgaagccgctgcc
gaagccacagccggtgccacggatgcagagcccgtcgcagaaaccagccaggaagctccg
gccgcaacagcggaggagcatgctgaaacggacgctgccggttcgtcctccttgttcctt
gagccggtctccatcacctcgatgatcttccaggcgcccgacctcagtgctgttgtccgc
ccggccgaagagaaagacgccgaggccgacgatgaaaccgaggccagcggtgaagctgag
tcggaagatgccggcagccgccgccgtcgccgcagccggggacgccgcggacgccgcggc
aacgaacgcgatgacaacgatgccgagggcagcagcgaaaccgaagacgacgaagctccc
gctgcggaggcgttggaagagggcgtcacttcgcgtcgtcgccgtcggcgccgtcggggg
gaccaggaccttgaactgaccggcggatcggatgacgatccgcccaacacggtcacccgg
gtccgggcgccccgccccatcaccgagaccgctgcctccaaccgggtggcgagcgtcaag
ggttcaaccaggctcgaagccaagaagcagcgacgccgcgaatcgcgcgaaaccggtcgc
cgccgccaggtcatcaccgaggccgagttcctggcgcgtcgtgagtccgtcgaccgccag
atgatcgtccgccagcgcgatgacagaatccagatcggcgtcctggaagacggcgtgctg
gctgaacactttgtttccaagacccagcaggactccctcatcggaaacgtctacctgggc
aaagtacagaacgtcctgccgtccatggaggcagcgttcgtcgacattggacgcggccgc
aatgcggtgctctatgccggcgaggtgaactgggacgcggtgaaccttgagggccaaccg
cgccggatcgagaacgcgctcaagtccggagactccgtcctggtgcaggtcaccaaggac
cccgtgggtcacaagggtgcgcgtctgaccagccagatctccctgccgggccgctacctc
gtctatgtcccgggcggttccatgaccggaatctcccggaaactgcccgacgtcgaacgg
aaccgcctcaagcggatcctgaaggaccgtttgccggagaacgccggcgtgattgtccgc
acggccgccgaaggcgcgtcggaagaggaactgacccacgacatcaaccgcctccgggcg
cagtgggaaggcatcgagagccaagcatcctcaaccaaggtccttgccccggaactgctg
tacggcgaaccggacctcaccatcaaggtggttcgggacgtcttcaacgaggacttctcc
aagctgattgtttccggcgacgaagcctgggacaccattgaggcctacgttacgtacgtt
gcgcctgacctggtgggtcgcttggaaaagtggaccaaggaccaggacatctttgctgcc
tggcgcattgacgaacaaatccacaaggctctggaacgcaaggtcttcctgccgtccggc
ggctctttggtgatcgaccgtaccgaggccatgactgtcgtggacgtcaacaccggcaag
ttcaccggcagcggcggcaacttggaagagaccgtcaccaagaacaatctggaagcggcc
gaagaggtagttcgccagctccgcctccgtgacatcggcggcatcatcgtcatcgacttc
atcgatatggtcctggagtccaacagggacttggtgctgcgccggctggtggagtgcctt
ggccgcgaccgcaccaagcaccaggtggcggaggtgacgtccctgggcctcgtccagatg
acgcgcaagcgcatgggcacaggcttgctggaggtcttcggtgagcaatgcgagcactgt
gccggccgcggcgtggtgacgcacgacgagcccgtggagcaccgccgcgcgaatgtggtg
gctgccgagcagcaccggtcccacaccgaagcacagcagccgtcccagcgcagtgagcgt
aagcgtcgccgcggcaaggggggcaaccaggcaccggaagctacgacgccggtccagccg
gccgctgccccgacggcacccgctccggctgagtccgtggatcccgcccagaaagccaag
gcagaggctacccgggccgcattggcgacgatcgccgctgctgcgcacgctgcacacctg
cacgatgacgaggtgcaccgcgccgaggaagcagcccgcgccgccggtaaggcggaagca
ggccagtcgggtcccgcccaggcggatcctgcccggaaggctcctgcgcagtcggctcct
gcccaaggggatgccgcccaggcccctgcgcagggcgggcagacgcagggctccaccccg
gcagaaactgcggccagggagggccgtccggctccggtactgcgcttcggcggagaggaa
gtggctctgcctttcgtggagcatcacgacgaacctgccaagaagcctgccatgagcctg
gatctgctggctgaggccttctcgcacttgggcggcacacctgaggttgtccccgggtct
gaggttgccgggtctgagaaggacgcgcccgggaacgttgaatctgctgacgcacccgtg
agcgccgacgccttgccagccacgtccgctggtactgaacccgtggagtcccggtccggc
gcccggggccggcgcggcaggcggaaccgcagtgccagcagggcccagggtgctgccaac
gagaccaacgttgagcaccacgacgttcgggccgccacaggtggcgggacctcgcacgaa
gcgaaggcgccggctgagccggcaaagaagccaactccagcctcggagccgatcatcctt
ggggtgggtgttccggcgtcggagctgtaa
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