Paenarthrobacter sp. R1: QN084_12140
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Entry
QN084_12140 CDS
T10646
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
phrz Paenarthrobacter sp. R1
Pathway
phrz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QN084_12140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phrz03400
]
QN084_12140
Enzymes [BR:
phrz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QN084_12140
DNA repair and recombination proteins [BR:
phrz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QN084_12140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Oxidored_nitro
Motif
Other DBs
NCBI-ProteinID:
WIV29130
LinkDB
All DBs
Position
complement(2497119..2499638)
Genome browser
AA seq
839 aa
AA seq
DB search
MAGKQKERVVVEGHELTLTNLGKIIYPETGTTKAEVLAYYAAVAPYLIPAAANRPVTRKR
WVNGVGTAENPGEVFFQKNLEDSAPRWIPRVTIHHSDHANVYPMVNSLATLTWMAQIASL
EIHVPQWQVDPAGNPLRPDRFVLDLDPGPGAGLPECVEVARLARSILQDMGMEPVPVTSG
SKGIHLYTGLEGTLKSDQVSAFAHELARALEADHPALVVSDMKKSLRNGKVLVDWSQNSG
NKTTIVPYSLRGKAHPTVAAPRTWAELEDPDLDHLDYTEVMERVSTGEDFFAPISGRHLP
PHGENDDVGRPGSASSDANPGGREKLTVEGRLSKYVGMRDPGKTPEPFPSSSGPSAGDAS
RRSSEQPKPGDPAPPGGIFVIQEHHARRYHLDLRLERDGVLASWALPRGVPETPDRNNLA
VHTEDHPMEYADFAGVIPKGEYGAGTMTIWDRGEYTCEKWREGKEVIATLTGEPGGGLGG
TKRLALINTGDRWLIHLMKEQPGGRRAPKAAPEPPKPGPMQDYAPMLATSGTTDDLHGGD
WLYELKWDGIRAIITGTEGKIRLMSRNGNDLTATYPELTDRSCWPDGDFVADGEIVALGK
GSRPDFGLLQQRMNLVKAGDIERARASVPVQLMLFDLLYDDGADLTGLPFRGRRERLAAF
AERLTGGCPLHLSEVLDHDVDDLLHVASDLKLEGVMAKKAGSRYSPGRRSRAWIKLKLEQ
SQEVVVGGWRPGAGARSGTFGSLLLGVPRDGKLHYVGRVGTGFKDWQLKEIMGKLESRAA
EESPFLDIPREDAAGARWVDPELVAEVTFGEWTGPGRLRHPVWRGWRPDKSPEDVNQPN
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
gtggcaggaaagcagaaggagcgtgtcgtcgttgagggtcatgagctgaccctcacgaac
ctgggcaaaatcatctacccggagaccggcaccaccaaggccgaagtgctggcctactac
gccgcggttgccccctacctgatccccgcggcggccaaccggcccgtgacgcgcaagcgc
tgggtgaacggcgttggaacggcagaaaacccgggcgaggtcttcttccaaaagaacctg
gaagactcggcgcccaggtggattccgcgggtcaccatccaccattcggaccacgccaat
gtctaccccatggtcaacagcctcgccacgctgacgtggatggcgcagatcgcgtcattg
gaaatccacgtaccgcagtggcaggtggaccctgccggcaacccgttgcgccccgaccgc
tttgtcctcgacctcgatcccgggccgggcgcaggcctgcccgaatgcgttgaagttgcc
cggctggcccggtccatcctccaggacatgggcatggagccggtgccggtcaccagtggc
agcaagggcatccacctctacacgggcttggagggcacgctgaagtccgatcaggtctcc
gccttcgctcacgaacttgcccgggccttggaagcggaccacccggcgttggttgtgagt
gacatgaagaagtccctccgcaacggaaaagtcttggttgactggagccagaacagcggc
aacaagaccacgattgtcccgtactcgctgcgcggcaaggcgcatcccaccgtcgccgct
ccgaggacctgggcggagctcgaagacccggacctggaccacctcgactacaccgaagtg
atggaacgggtcagcactggcgaggacttcttcgcgccgatttccggccggcacctcccg
ccgcacggtgaaaacgacgacgtcggaaggccgggttccgcgtcatcggatgcgaacccg
ggtggtcgggagaagctgacggtggagggccgcctgtccaagtacgtaggaatgcgtgat
ccgggcaagaccccggaacctttcccgtcgtcgtccggtccttccgcaggcgacgcgtcc
cggaggtcgtccgaacagcccaagcccggagaccctgccccgcccggcggtatcttcgtc
atccaggaacaccacgcccggcgataccacctggacctgcgcctggagcgggacggagta
ctggcctcatgggcgctgccgcgcggcgtcccggaaacgccggaccggaacaaccttgcc
gtgcataccgaagaccaccccatggagtacgccgattttgcgggtgtcatccccaaaggc
gagtacggtgcagggaccatgaccatctgggaccgcggcgaatacacgtgcgaaaaatgg
cgcgaaggcaaggaagtgatcgccaccctcacgggggaaccaggcggtggcttgggcgga
acaaagcggctcgccctcatcaacaccggcgaccgttggctcatccacctcatgaaggaa
cagcccggaggccgcagggcgcccaaagcggcaccagaaccacccaaacccggaccgatg
caggactatgcgccgatgctggcgacgtcgggcaccaccgatgatctgcacggaggtgac
tggctctacgaactcaaatgggatggcatccgcgccatcatcaccggaaccgaaggcaaa
atccggctgatgagccgcaacggcaacgacctcacggccacctaccctgagctgacggac
cggtcctgttggcccgacggcgacttcgtggcggacggcgaaatagttgccctcgggaag
ggttcgcggcccgacttcggcttgctccagcagcgcatgaacctcgtcaaagccggggac
attgagcgggcccgggcttcggttcccgtgcaactgatgcttttcgaccttttgtacgac
gacggcgcggacctcaccgggctgcccttccgcggtcggagggagcggctcgcagccttt
gccgaacgcctgactggcggttgcccgcttcatttgtccgaggtactggaccatgatgtg
gacgacctcctgcatgtggcgtccgatctcaaactggaaggcgtgatggccaagaaggcc
gggagccgctactcccccgggcggcgcagccgggcgtggatcaagctgaagctcgaacag
agccaggaggtagtggttggcggctggcgtccgggcgccggagcccggagcggaacgttc
ggctcgctcctcctgggggtcccccgtgacgggaagctgcattacgtgggacgcgtgggc
accggcttcaaggactggcagctgaaggagatcatgggcaagctcgagtcccgtgctgcg
gaggaatcgcccttcctggatattccgcgcgaggatgccgcgggcgcacggtgggtggat
ccggagctggtggctgaggtgactttcggggagtggaccggcccgggccgtttgcggcac
ccggtgtggcggggttggcggccggacaagtctcctgaggacgtgaaccagcccaactga
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