Paraburkholderia hospita: C2L64_04535
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Entry
C2L64_04535 CDS
T05305
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
phs
Paraburkholderia hospita
Pathway
phs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2L64_04535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phs03019
]
C2L64_04535
03009 Ribosome biogenesis [BR:
phs03009
]
C2L64_04535
Enzymes [BR:
phs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C2L64_04535
Messenger RNA biogenesis [BR:
phs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C2L64_04535
Ribosome biogenesis [BR:
phs03009
]
Prokaryotic type
rRNA processing factors
C2L64_04535
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AUT67685
UniProt:
A0AAN1J561
LinkDB
All DBs
Position
1:complement(1009705..1013016)
Genome browser
AA seq
1103 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFREGIDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMSQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGSQGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVNKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLVPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRTEEVKPKQEAAVKGITPEK
PAPSAPVRTPAPAAATVEVKPATGGFIGWLKGLFGVQPAAPAPAPAPVEKTAKPARGERT
ERGERTGERGGDRNRNRRNGAGGRDAAGRGEGAATQGRQAQPSQRGERQEREPREAREPR
GGREPREGREPREAREPREARPERVERGQERADRAETAEVTRGERQERQDRADRGERRER
GERAERGERRKQQPEAADALSQDEAQADIAAQAQANLMGGAAPIDDARDGEERRRRRRGR
RGGRRERDEEGVNVNTAADVAEAEGETAVAASAETPVRAPEHTGRHEAQPQAVEAAQQQP
AQEVKPVEVVVAAVATGAAVVSELHASAETPALAVEKAAKAEAVVPTDEAPVATHTEAAV
EEPAAVEPQAVAPVATVQAPVEVPAPVETVAAAPVAEAPVVVEPVAEPVAAAPAPAAPAE
EAQPVVEAPVATQPVVEPVVQAVVEPVVQPVAEPVADVAQAQPAAEPAVTEAVTQAAPIA
AAAEPQPVRTNGTSARRQSTQGLETMLQSAGLVWVNTDSDKLRVAQEAAAQAVKPARAPR
ERKALPATDTTPMQQVETAKQPQ
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaatgcgacgcagcaggaagaattgcgcgtcgccatcgtcgat
gggcaaaaactcatcgacatcgacatcgaaaccgccggccgcgaacagcgcaaaggcaat
atctacaagggcatcattacccgcatcgagccgtcgctcgaagcctgtttcgtcaactat
ggcgaagaccgccatggttttctcccgttcaaggaagtcgctcgccagtacttccgcgaa
ggcatcgacatgcgctcggcgcgcattcaggacgccctcaaggaaggccaggaactgatc
gttcaggtcgagaaggaagaacgcggcaacaagggcgcggccctcaccacgttcatctcg
ctcgccggccgttacctcgtgctgatgccgaacaatccgcgcggcggcggtgtgtcgcgc
cggatcgaaggcgacgaccgccaggaactgcgcgaaacgatgtcccagctgcaactgccc
gaaggcatgagcatcatcgcgcgcacggcgggtatcggccgtagcgcggaagagctgcaa
tgggacctgaactacctgatgcagctgtggcgcgcgatcgaagccgcgtcgcaaagcggc
tcgcaaggtcagccgatgctgatctatctcgaatcgagcctcgtcatccgcgcgattcgc
gactacttccagccggacatcggcgaaatcctcatcgacaccacggaaatccacgaccag
gcacgcgccttcatggatatcgtgatgccggacaatgtcaacaaggtgaagcggtatcac
gacgacgtgccgcttttctcgcgtttccagatcgagcaccagatcgagacggcgtactcc
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacacggaagcgctcgtc
gcgatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaacggccacg
cgcacgaacctcgaagccgccgacgaagtcgcgcgccagttgcgtctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgatatggagtcggccaagagccagcgcgaagtcgag
cagcgcctgaaagacgcgctcaagcacgaccgcgcgcgcgtccagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcgtctgcgtccggcgctgtcggaaggcagc
cacgtgacctgcccgcgctgtaacggcacgggccacatccgcgataccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgcccgtcgaggtcacggccttcctgctcaacgaaaagcgctcggaaatcaac
aagatcgagtcgcgcttcaaggtcaacgtcgtgctggtgccgaacaagcacctcgacacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgatccgcgcgcg
tcgtggaagatggccgaagaagcggcccgcgaactggaatcggaaacgggttacagcaag
cgcaccgaagaagtgaagccgaagcaggaagcggccgtgaagggcatcacgcctgaaaag
ccggcgccgagcgcgcccgtgcgcacgccggcccccgctgccgccacggtcgaagtcaag
cccgccacgggcggcttcatcggctggctgaagggtctgttcggtgtgcaaccggcggct
cccgctcccgcgcccgctccagtcgagaagacggcgaagcccgcacgcggcgaacgcacc
gagcgtggtgagcgcacgggcgagcgcggcggcgatcgcaaccgcaaccgtcgcaacggc
gcaggtggccgcgatgcggcaggccgtggcgaaggcgcggcaacgcaaggccgtcaggct
caaccgtcgcagcgcggcgaacgtcaggaacgcgaaccgcgtgaagcacgtgagccgcgt
ggcggccgcgagccgcgcgaaggccgcgagcctcgtgaggcacgcgaaccgcgcgaggca
cgcccggagcgcgtcgaacgcggtcaggaacgcgcagaccgcgcagaaaccgctgaggta
acgcgcggcgagcgtcaggaacgccaggatcgggcggaccgtggcgagcgccgtgagcgt
ggcgaacgcgccgaacgtggcgagcgtcgcaagcagcagcccgaagcagccgacgcgctg
agccaggacgaggctcaggccgatatcgccgcacaggcgcaagcgaatctgatgggtggc
gctgctcccatcgacgacgcgcgtgatggcgaagagcgtcgtcgtcgccgtcgcggccgc
cgtggtggccgtcgcgagcgtgacgaggaaggcgtgaacgtgaacacggctgccgatgtc
gcggaagcggaaggcgaaacggctgtggcagcatcggcggaaacgcccgtgcgcgcaccg
gaacacacgggccgtcatgaagcgcagccgcaagcggtcgaagcggcacaacaacagccg
gcacaggaagtgaagccggtcgaggtcgtcgtggcagccgtcgcgacgggcgccgccgtg
gtcagcgagttgcatgcatcggctgaaacgccggcgctggctgtcgaaaaggctgcgaag
gcggaagccgtcgtgcccaccgacgaagcgcctgttgcgacgcacacggaagcagccgtc
gaagagccggccgctgtcgagccgcaagcggttgcgcctgtcgcaacggtgcaggctccc
gttgaagtgcccgcgccggttgagaccgtagcggcagcacccgtcgccgaagcgcctgtc
gtcgtcgagcctgtagccgagccggttgcagcggctccggccccggcagcgcccgccgaa
gaagcgcagccggttgtcgaagcgcccgttgcaactcagcccgtcgtcgagccggtggtt
caggccgtcgtcgagccggtcgttcagccggtcgcggagcccgtcgcggacgtcgcgcag
gcgcaacccgcagcggaaccggccgtaacggaagcggtaacgcaagccgcgccgatcgcc
gcagcagccgagccgcaacccgttcgcacgaacggcacgtcggcccgccgccagtcgacg
caaggcctcgagacgatgctgcaaagcgccggcctcgtctgggtcaacaccgactcggac
aagctgcgcgtcgcgcaggaagccgccgcgcaggcggtgaagcccgcacgcgcgccgcgc
gagcgcaaggcgcttccggccaccgacacgacgccaatgcaacaggtcgaaacggcaaag
cagccgcagtaa
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