KEGG   Paraburkholderia hospita: C2L64_09135
Entry
C2L64_09135       CDS       T05305                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
phs  Paraburkholderia hospita
Pathway
phs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:phs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C2L64_09135
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:phs03021]
    C2L64_09135
   03019 Messenger RNA biogenesis [BR:phs03019]
    C2L64_09135
Transcription machinery [BR:phs03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     C2L64_09135
Messenger RNA biogenesis [BR:phs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     C2L64_09135
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB S1CSD-TOTE-2 ATPase_2 AAA_25 AAA_22 Phostensin_N
Other DBs
NCBI-ProteinID: AUT68469
UniProt: A0AAJ4WY57
LinkDB
Position
1:2042255..2043520
AA seq 421 aa
MHLSELKTQHVSQLIEMANGLEIESANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHV
QVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEILQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKNNAEFFDMMRRGG
G
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcatttatccgagcttaagacccagcacgtttcccaattgatcgagatggccaatggt
ctcgagatcgaaagtgcgaaccgcctgcgcaagcaggaactgatgttcgccattctaaaa
aaacgcgccaaaacgggcgaaacgatcttcggtgacggcaccctcgaagtgctgccggac
ggcttcggcttcctgcgctcaccggaaacctcgtatctcgccagcacggacgacatttac
atcagcccgtcgcagatccgccgcttcaacctgcatacgggcgacacgatcgaaggtgaa
gtccgcacgccgaaggacggcgagcgctacttcgcgctggtgaaggtcgacaaggtcaac
ggccagccgccggaagcctcgaagcacaagatcatgttcgagaatctgacgccgctgcac
ccgaacaaggtgctgctgctcgaacgtgagatgcgtggcgaagaaaacgtcacgggccgg
atcatcgacatgatcgcgcccatcggcaagggtcagcgcggtctgctcgtcgcgtcgccg
aagtccggcaagaccgtgatgcttcagcacatcgcgcatgcgatcaagcagaaccatccg
gacgtgatcctgttcgtgctgctgatcgacgaacgtcctgaagaagtgacggaaatgcag
cgctcggtggcgggcgaagtcattgcgtccaccttcgacgaaccggccgcgcgtcacgtg
caggtcgccgaaatggtgatcgaaaaagccaagcgcctcgtcgaaatgaagaacgacgtc
gtgatcctgctcgactcgatcacgcgtctcgcacgcgcctacaacacggttgtccccgca
tcgggcaaggtgctgacgggcggtgtcgacgcgaacgcgctgcaacgtccgaagcgcttc
ttcggcgcggcccgtaacatcgaggaaggcggttcgctgaccatcatcggcacggcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaagagttcaagggcacgggcaac
atggaagtgcacctcgagcgccgtctcgcggaaaagcgcgtctatccgtcgatcaacctg
aacaagtccggcacgcgtcgcgaagaactgctcatcaagcctgagatcctgcaaaagatc
tgggtgctgcgcaagttcatccacgacatggacgaagtcgaagcaatggaattcctgctc
gacaagatccgccagacgaagaacaacgccgagttcttcgacatgatgcgtcgcggcggc
ggctaa

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