Paraburkholderia hospita: C2L64_50850
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Entry
C2L64_50850 CDS
T05305
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
phs
Paraburkholderia hospita
Brite
KEGG Orthology (KO) [BR:
phs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phs03016
]
C2L64_50850
Enzymes [BR:
phs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C2L64_50850
Transfer RNA biogenesis [BR:
phs03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C2L64_50850
Prokaryotic type
tRNA splicing ligases
C2L64_50850
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AUT76494
UniProt:
A0AAN1MRA5
LinkDB
All DBs
Position
5:404604..405800
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AA seq
398 aa
AA seq
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MEVASGKAVKMWAQGVAIEEACRRQLRNMARMPFVFRHVAVMPDAHVGKGSTIGSVIPTQ
GAIIPAAVGVDIGCGMMAVRTTLTAADLPASLSRVRSAIERAVPHGGAVGRRDPGAWSRP
PPVVDDAWKLLAPSFQRIVDKYPSLARTNNHAHVGTLGSGNHFIEVCLDGDDSVWFMLHS
GSRGVGNAIGSLFITLAQADMRQHLANLPDKDLAYFREGSRHFDDYVEAVGWAQQYACCN
REVMMNAVIDAVRATIGKPFTIDEHVVNCHHNYVQKERHFGVDIFVTRKGALSARAGEFG
IVPGSMGAKSFIVRGLGNEESFCSCSHGAGRAMSRKEAKRRFTVQDQISATEHVECRKDA
GVIDEIPMAYKDIDAVMSAQRNLVEVVHTLRQVVCVKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggaagtggcaagcggcaaggccgtgaagatgtgggcacagggcgtggctattgaggag
gcgtgtcgccggcagttgagaaacatggcccgcatgccgttcgtattcaggcacgttgcc
gtcatgccagacgcgcacgtgggcaaaggctcgacgatcggcagcgtgattccgacacag
ggcgcaatcatcccggcggccgtgggcgtcgatatcggctgcgggatgatggcggttcgt
acaacgttgacggccgcggacctgcccgcttcgctttcccgcgtgcgcagcgcgatcgaa
cgcgccgtgccgcacggcggtgcggtggggcgacgcgatccgggtgcatggtcgcgtccc
ccgccagtcgtcgacgacgcctggaagctgctggcgcccagttttcagcgcatcgtcgac
aagtatccttccctcgcgcgcacgaacaaccacgcgcacgtaggcacgctcggcagcggc
aatcacttcatcgaggtatgtctcgatggcgatgacagcgtctggttcatgctgcacagc
ggatcacgcggcgtgggcaacgcgattggcagcctcttcattacgctggcccaggccgac
atgcgtcaacaccttgcgaatcttccggacaaggatcttgcgtacttcagggaaggcagc
cggcacttcgatgactacgtggaagcagtcggctgggcacagcagtacgcgtgctgcaac
cgtgaggtcatgatgaatgccgtgatcgacgcggtgcgcgcaacgatcggcaaacccttc
accatcgacgagcacgtggtgaactgccaccacaactacgtacagaaagagcggcacttt
ggcgtcgacatatttgtaacgcgtaaaggagcgttgtcggcgcgggcgggcgagttcggc
atcgtacccggttcgatgggcgcgaagagctttatcgttcgcggcctcggcaacgaagag
agcttctgctcatgcagtcacggcgccgggcgcgcaatgagccgtaaagaggccaagcgg
cgcttcacggtccaggatcagatcagcgcgacggagcatgtcgaatgccgaaaggatgca
ggggttatcgacgaaattccgatggcctataaggacatcgacgcggtgatgtccgcgcag
cggaatctggtcgaggtggtgcatacgctgcgacaggtggtttgtgtgaaaggttag
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