Phyllobacterium zundukense: BLM14_02235
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Entry
BLM14_02235 CDS
T05167
Name
(GenBank) helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pht
Phyllobacterium zundukense
Pathway
pht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BLM14_02235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pht03019
]
BLM14_02235
03009 Ribosome biogenesis [BR:
pht03009
]
BLM14_02235
Enzymes [BR:
pht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BLM14_02235
Messenger RNA biogenesis [BR:
pht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BLM14_02235
Ribosome biogenesis [BR:
pht03009
]
Prokaryotic type
rRNA helicases
BLM14_02235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ATU90605
UniProt:
A0A2N9W087
LinkDB
All DBs
Position
complement(447964..449904)
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AA seq
646 aa
AA seq
DB search
MTIFDSIAPALSGALAARGYETLTPVQTAVLAPEADGADLLVSAQTGSGKTVAFGIAIAP
TLLDGAERFTSIGAPYALVIAPTRELALQVRRELEWLYEPTGARIASCVGGMDMTKERRA
LSQGAHIVVGTPGRLRDHITRGSLDMKELRAVVLDEADEMLDLGFREDLEFILGEAPKDR
RTLMFSATVPKPIAMLAKQFQKDALRITATSDREQHSDIEYHIMPVAPRERENAIINSLL
FYDAQNTIIFGSTREAVKHLTSRLSNRGFSVVSLSGELSQAERTNALQAMRDGRARVCVA
TDVAARGIDLPNLDLVIHADLPNNSETLLHRSGRTGRAGRKGICVLIVPPSRRRTAERLL
QGAKLATTMVPPPDADAINKRNHDRILNDPSLTEVMTEEEGDYVRELLGMHSAEQIAAAY
LRQQMAARPAPEELSNTPSHVLEPMRDSGRKGSFDDRPGRGERAPRSERFEQFESGAWFS
LSVGRKQRAEPRWLLPLICKAGDITKTDVGSIKILETETRFEITASKADAFMARIKQYGS
GEKGVNITRSEGAGPSSPRRSEGGDFKPKKNFGEKREYDDRKPRSYDDKPKSDWAAKPAK
AKPEGWTTEKPEKPKKTPKERKPGELHGFDKYKAKKAKKAAAGGAE
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgactattttcgattctatcgccccggcgctgtccggtgcattggcagcccgtggctac
gagaccctgacgcctgtgcaaaccgccgtcctggctccagaagcggatggcgcagacctt
ctggtctcggcgcagaccggctccggcaagactgtcgccttcggcattgccatcgcgccg
acattgcttgacggtgccgaacgcttcacctccattggcgcgccctacgcgctggtgatc
gccccgacccgcgaacttgccctgcaggtgcggcgcgagctcgaatggctctacgagccg
accggcgcgcgcattgcctcctgcgtcggtggcatggacatgaccaaggagcgccgtgcg
ctcagccagggcgcacatatcgtcgtcggcaccccgggccgtttgcgcgatcacatcacc
cgcggttcgctcgacatgaaagaattgcgtgccgtcgtgctcgacgaagccgatgaaatg
ctcgatctcggcttccgcgaggacctcgaattcatcctcggcgaagcgccgaaggaccgg
cgcacgctgatgttctcggcaacggtgccgaaacccatcgccatgcttgccaagcagttc
cagaaggatgcgctgcgtatcaccgcgacaagcgatcgcgagcagcacagcgacatcgaa
taccacatcatgccggtggcgccgcgtgagcgcgaaaacgccatcatcaattcactgctt
ttctacgatgcgcagaacacaatcatcttcggctccacccgtgaagcggtgaagcatctg
accagccggctttccaatcgcggcttctccgttgtctcgctgtccggtgaattgagccag
gctgaacgcaccaatgccctgcaggcgatgcgtgatggccgtgcccgcgtttgcgtggcg
accgacgttgctgcgcgcggcatcgatctgcccaatctcgatctcgtcattcacgccgat
cttccgaacaattccgagacgctcctgcaccgcagcggccgtacaggacgcgctggccgc
aagggcatctgcgttctgatcgtgccgccatcacgccgccgcaccgcagagcgcctactg
cagggtgcaaagcttgcaacgacaatggtgccgcccccggatgcggacgctatcaataag
cgcaaccatgatcgcattctcaatgatccttcgctgacggaagtcatgaccgaggaagag
ggcgattatgtacgcgagttgctgggcatgcattcagccgagcagatcgccgctgcctat
ctgcgccagcagatggctgcgcgccctgcccccgaagagctttccaacacgccgtcgcat
gtgctggagccgatgcgcgattctggccgcaagggcagcttcgacgacaggcccggacgc
ggcgaacgtgcacctcgctccgaacgtttcgaacagttcgagagcggtgcctggttctcc
ttgagcgtcggccgcaagcaacgcgccgaaccgcgctggctcctgccgctgatctgcaag
gcgggcgatatcaccaagaccgatgtcggctcgatcaagatcctcgaaaccgaaacccgt
tttgagatcaccgccagcaaggccgacgccttcatggcgcgtatcaaacaatacggctcc
ggcgaaaagggcgtgaacatcacgcgcagcgaaggcgccggtccttcgtcgccgcgtcgc
agcgagggtggcgatttcaagccgaagaagaacttcggcgagaagcgcgaatatgatgac
cgcaagccgcgctcgtatgatgacaagccgaaatccgattgggcggccaagccggccaag
gcgaagccggaaggctggaccacagaaaagcctgaaaagccgaagaaaacaccaaaagaa
cgcaaaccaggtgaactgcatggctttgacaaatacaaagccaagaaggcgaaaaaggcc
gctgcgggaggagctgagtaa
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