Phyllobacterium zundukense: BLM14_08990
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Entry
BLM14_08990 CDS
T05167
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pht
Phyllobacterium zundukense
Pathway
pht03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BLM14_08990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pht03400
]
BLM14_08990
Enzymes [BR:
pht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLM14_08990
DNA repair and recombination proteins [BR:
pht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BLM14_08990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ATU91738
UniProt:
A0A2N9W4Y0
LinkDB
All DBs
Position
complement(1832775..1836275)
Genome browser
AA seq
1166 aa
AA seq
DB search
MTAFSKLGLKPDINGHVVIDGVVDGYEAFALAKVVAEAGTGGPVLFIARDGQRVADLEQV
LNFVQPDLPVLQLPAWDCLPYDRVSPGADTSARRLAALAGLASLRNHKHPGVILATANAV
LQKLPPRKVLTEQLFMAKPGNRIDMNSLVQRLESNGFERVPTVRDVGEYAVRGGILDLFA
PGADEPLRLDFFGDTLETIRTFDPASQRTSSQKTEFSMQPMSEITLSPEIISYFRSQYVQ
TFGAPSRDDALYQSISEGRRFAGMEHWLPLFYDRLETVFDHAGNMPVVFDHLAHESMAER
HKMVLDHYEARRRQSDGKEPGDVIPYKPVEPGSLYLTPVEVEAAAVASGMRIDFTPFDAP
FVTGRAVIHAGAHRGRTFVEERTAKDTNVFDSVVKHIADERAAGKKVLLAARSEGTRDRL
VQVLNEHGLEKIELVDDLRTVKALARDKITAGILSLETGFDAGELVVVAEQDILGDRLIR
HSKRRKRDRDFISEVAALNAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLELHYAGDDRL
FLPVENIELLSRFGSETSTAVLDKLGGGAWQARKAKLKKRLLDIAGHLIRIAAERQMRGA
PILLPPDGLYGEFAARFPYDETEDQDRAIDAVIDDLSLGKPMDRLICGDVGFGKTEVALR
AAFVAALNGVQVAVVVPTTLLSRQHFKTFSSRFQGLPVNVAQASRLVGSKELAENKKGIA
EGHVDIAVGTHALLGQGIKFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIP
RTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLVIRETLLRERYRGGQSFYVCPRIS
DLDDIKAFLDAQVPELKVAVAHGQMAPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTA
NTLIIHRADMFGLSQLYQLRGRVGRSKQRAYALFTLPANKLLTQTAERRLKVLQSLDTLG
AGFQLASHDMDIRGAGNLLGEEQSGHIREVGFELYQQMLEEAVAEIKGTGEVEDGHWSPQ
ISIGTAVMIPETYVPDLQLRLGLYRRLADLEELQEIDGFGAEMIDRFGPLPEEVQHLLKI
VYIKALCRRANVDKLDAGPKGVVIQFRNKTFNNPVALVKMIGEQGAMAKIRPDQSIVLVR
DWPTAEKRLNGAAVVMTQLAKLSEAA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgactgccttttccaaactcggattgaagcctgacatcaatggccatgtggtcatcgat
ggtgttgtcgatggctatgaagcctttgcactggcaaaggttgtcgccgaggccggaaca
ggtggtcctgtgctgttcattgcccgcgatggccagcgcgtcgctgacctcgagcaggta
ttgaatttcgtgcagcctgatctgccggtactgcagttgccggcctgggattgccttccc
tatgatcgtgtatcaccgggcgccgatacatcggcgcggcgtctcgcagcgctggccggt
cttgcgtcattgcggaatcacaagcatccgggcgtcattttggcgacagccaatgcggtt
ttgcaaaaactaccgccgcgcaaagtactcactgaacagcttttcatggcgaagccgggc
aatagaattgacatgaattcgcttgtgcaacgccttgaaagcaatggttttgaacgtgtg
ccaaccgtccgcgatgtgggtgaatatgccgtgcgcggtggcattctagatctcttcgca
ccgggcgccgacgagccgctgcggctcgatttcttcggcgatacgctcgaaacaatccgt
actttcgatccggcgtcgcaacgcacgtcgagccagaagactgaattctccatgcagccg
atgagcgaaatcacgctgtcgccggagatcatcagctacttccgctcgcaatatgtccag
acgtttggtgccccgtcgcgcgacgacgcgctttatcagtcgatttcggaaggccggcgt
tttgccggaatggaacattggctgccgcttttctatgacaggctggagacggtattcgat
cacgcgggaaatatgccggtggtcttcgaccatctcgcgcatgaatccatggccgagcgc
cacaagatggtgctggatcactacgaagcgcgcaggcggcagtccgacggcaaggaaccc
ggggatgtcattccgtacaagccggtggagccgggctcgctctatctgacgcctgttgag
gtcgaagcagccgctgtcgcatcgggcatgcggatcgatttcacgccattcgacgcacca
tttgtgacgggtcgggcggtcattcatgccggcgcgcatcgaggacggacattcgtcgaa
gaacggacagcaaaggataccaatgtcttcgacagcgtggtcaagcatattgccgacgag
cgcgctgcaggcaagaaagtgctgctggcggcacggagtgagggcacgcgggaccgcctg
gtgcaggtcctgaacgaacacggtctggaaaagatcgagctggtcgatgatctgcggacc
gtgaaggcacttgcccgcgacaagatcactgcgggcattctctcacttgaaacaggcttc
gacgcaggtgaactggttgtcgtcgcggagcaggacattctcggcgaccggctgatccgt
cattccaagcgccgcaagcgcgacagggatttcatcagcgaagttgcagcgctgaacgca
ggcgacatcgtcgtgcatgtggatcacggtattggccgctttatcggtttgaagacgatc
actgccgccggagctccacatgattgtcttgaacttcactatgcgggcgatgacagacta
ttcctgccggtggaaaatatcgagctattgtccaggtttggctcggaaacttcaaccgct
gtcctagacaaactcggtggtggtgcctggcaggcacgcaaggccaaactcaagaaacgc
ctgctcgacattgcaggccatcttatccgcattgccgcggaacggcagatgcgcggtgcg
ccgatcctgctgccgccggacgggctctatggcgagttcgccgcacggttcccctatgac
gaaacggaagatcaggaccgtgcaatcgatgccgtgatcgacgatctgtcgctggggaag
ccgatggaccggctgatttgcggcgatgtgggcttcggcaagacggaagtggcgttgcgc
gcggcgttcgttgcggcactgaacggcgtgcaggttgccgtcgtggtaccgacgacgctt
ttgtcgcgccagcatttcaagacattttcctcgcgttttcagggactgccagtcaatgtg
gctcaggcctcgcgcctcgttggttcgaaggaactcgccgagaacaagaaaggcatcgcc
gaaggtcacgtcgatatcgccgttggcacgcatgcgctgctcgggcagggcataaaattc
aagaatctcggccttttgatcatcgacgaggagcagcatttcggcgtcaagcacaaggag
cggctgaaagagctgaagtccgacgtgcatgtgcttacgctttcggcgacaccgataccg
cgcaccttgcagcttgctttgactggtgtgcgcgaactttcgttgatcaccacgccgccc
gtggaccgcatggcagtgcgcaccttcgtctcaccattcgatccgcttgtcattcgcgaa
acattgctgcgcgagcgctatcgcggtggccagagcttctatgtctgcccacgcatttcc
gaccttgacgacatcaaggcgtttctcgatgcccaggtacccgaactgaaggttgcggtc
gcccatggccagatggcgccgggcgagctggacgacatcatgaacgccttctatgatggc
cagtacgatgtgttgctatcgacgaccatcgttgaatccgggctcgacatcccgaccgcc
aatacattgatcatccaccgcgcggatatgttcggcctgtcgcagctttaccagttgcgc
gggcgtgtcggcaggtcgaagcagcgcgcctatgcgctatttacgctaccggccaataag
ttgctgacgcagaccgcagaacgcaggctcaaagtgctgcaatcgctcgacacgctcggc
gcgggtttccagctggcgagtcatgacatggatattcgcggcgccggcaatctgctgggc
gaagaacagtcaggccatattcgcgaggtgggtttcgagctctatcagcaaatgctggaa
gaggcggtcgcggagatcaagggcaccggcgaagtcgaggacggacactggtcgccgcag
atttcgatcggcaccgccgtcatgatccccgagacttacgtgcccgatcttcaattgcgc
cttgggctgtatcgccgtctcgccgatctggaagagcttcaagagattgatggctttggc
gcggagatgatcgatcgcttcggtccgctgccggaagaggtccagcacctcctgaagatc
gtttacatcaaggcgctgtgccgtagagccaatgtcgataagcttgacgcgggcccgaag
ggtgttgtcatccagttccgcaacaagacgttcaacaacccggtcgctctcgtcaaaatg
atcggcgagcagggtgccatggccaagatccggccggatcaaagcatcgtcttggtgcgt
gactggccgacagccgagaagcggctcaacggtgcggcagtcgtgatgacgcaactggcc
aagctttccgaagctgcatag
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