Phyllobacterium zundukense: BLM14_10235
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Entry
BLM14_10235 CDS
T05167
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pht
Phyllobacterium zundukense
Pathway
pht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BLM14_10235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pht03019
]
BLM14_10235
03016 Transfer RNA biogenesis [BR:
pht03016
]
BLM14_10235
Enzymes [BR:
pht01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BLM14_10235
Messenger RNA biogenesis [BR:
pht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BLM14_10235
Transfer RNA biogenesis [BR:
pht03016
]
Prokaryotic type
tRNA degradation factors
BLM14_10235
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
RNase_II_C_S1
OB_RNB
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
ATU91965
UniProt:
A0A2N9W498
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All DBs
Position
2060373..2062697
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AA seq
774 aa
AA seq
DB search
MARRISPPSGKKRLANSAAPKREAHVPSREEILQFIKENPDLAGKRDIAKAFNLKGDARI
ALKDILRDLAGDGLVEKRAKRLAVPGSLPSVAVLDITGREGDGGLIAKPAEWDANHQERP
PVVFIRASRNQKGPTPGVGDRVLARLFHGADPTGPAYTARIIKRIEHRKDAVLGVLRKLD
NGEWRLEPVERRQVELAIDPTQLNNAKANDLVEVEVSKVSRYGLALGRITQVVGSVASEK
ALSMIAIHEHEIPHVFPDSVIAEAEKAKPATMAHREDWRHVPLVTIDPADAKDHDDAVYA
EPDPDEKNPGGFIATVAIADVAAYVTPDSQLDREALKRGNSVYFPDRVVPMLPERISNDL
CSLKELVDRPALAVRMVFNAEGRKISHTFHRIMMRSHARLAYPQAQAAIDGTTDEKTAPI
LDTILKPLWAAYAALKRGRDAREPLELDLPEKKILLTPEGKVDKVVIPPRLDAHKLIEEF
MIQANVAAAETLERKKQPLIFRIHDAPSLAKQETLREFLRTLDISLARGAELRPNQFNHI
LKRVEGSEQQDLVNQVVLRSQSQAEYNPENIGHFGLNLHRYAHFTSPIRRYADLIVHRAL
ISALGLGPDGITPKEEAALPEIAALISTSERRAMAAERDTVDRLIAHYLADKVGASFDGR
VQGVTKAGLFVSLATYGADGFIPISTLGDDYYLYDETNHVLSGERSGKGFRLGDIVEVRL
VEALPVAGALRFEMLTEPHPVPSGVRSHHKAKRFIRGNQKRPSSVSRGGRRGRG
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
ttggcacgccgtatctctccacccagcggaaaaaaacggcttgccaattctgcggccccg
aaacgagaggcccatgtgccaagccgggaagagattctccagttcattaaggagaatccg
gacctcgccggcaagcgcgacatagccaaggcattcaacctgaagggcgatgcacgcatt
gcgctcaaggatatcctgcgggatctcgccggtgatgggcttgtcgaaaagcgcgccaag
cgcctggcggttccgggcagccttccgagtgttgcggtcctcgacataacggggcgcgag
ggcgatggcggtctgatcgcaaaacccgcagaatgggacgccaatcaccaggagcgcccc
cctgttgttttcattcgcgcctcgcgcaaccagaagggtccgacgcctggcgtcggcgac
cgcgttctggcgcgcctcttccatggcgccgatccgaccggccccgcctacacagcccgg
atcatcaagcggatcgagcatcgcaaggatgcggtgcttggcgtattgcgcaagctcgac
aatggcgaatggcgtttggaaccggtcgagcgccggcaggtggagcttgccatcgacccc
acccagctcaataacgcgaaggccaatgatctcgttgaggtcgaggtctcgaaagtcagc
cgctacgggctcgcgctgggacggatcacccaggtcgtaggctcggtggcgagcgaaaaa
gcactgtcgatgatcgccatccacgagcatgagataccgcatgtcttcccggacagcgtg
attgcggaagccgaaaaggccaagcccgcaaccatggcccaccgcgaggattggcggcat
gttcccttggtgaccatcgatccagccgatgccaaggatcatgacgacgccgtttatgcc
gagccagatcctgacgagaagaatcccggcgggttcatcgccaccgtcgccattgccgac
gttgccgcctatgtgacgccggattctcagcttgatcgcgaggcattgaagcgcggcaat
tcggtctacttcccggaccgggtcgtgccgatgcttcccgagcgtatttccaacgatctt
tgctcgttgaaggagctggtggatcgccctgcccttgccgtccgcatggttttcaacgcc
gagggccgcaagatttcgcatacgttccaccgcatcatgatgcgttcgcatgcacgtctc
gcctatccgcaggcgcaggcggcgatcgatggcacgacggacgagaagaccgcgccgatc
ctcgatacgatcctcaagccgctgtgggcggcctatgcagcactgaagcgcggccgcgat
gcgcgtgagccgctggagctcgaccttcccgaaaagaagatattgctgacaccggaaggc
aaggtcgacaaggtggttattccgccgcggctcgatgcgcacaagctcatcgaagagttc
atgatccaggccaatgtcgccgctgcggaaacgctggagcgcaagaagcagccgctgatc
ttccgcattcacgatgcgccgtcattggccaagcaggaaacgctgcgcgaattcctgcgg
acgctggatatctccctggcgcgcggcgcggagctgcgccccaaccagttcaaccatatc
ctgaagcgggtcgagggcagcgaacagcaggatctggtcaaccaggtcgtgctgcgatca
cagtcacaggctgagtataatccggagaacatcggccatttcggcctcaatctccatcgc
tatgcgcatttcacctcgccgatccgccgctatgccgacctgatcgtgcatcgggcgctc
atctccgcgctggggcttggtccggatggcattaccccgaaggaagaagcagcccttcct
gaaatcgccgcgctgatttcgacttccgaacgccgcgccatggcggccgagcgtgacact
gtcgatcgcctcatcgcccactatcttgcggacaaagtcggagccagttttgatggccgt
gtgcagggcgtcaccaaggccgggctcttcgtctcgcttgcgacatatggtgccgacggg
tttattcccatttcaactttgggtgatgattattatctttacgacgaaaccaaccacgtg
ctttccggtgaacgcagcggaaaaggcttccggcttggcgatatcgtcgaggttcgtctg
gtcgaggccttgcctgtagcaggcgcattgcgattcgaaatgctcaccgaacctcacccg
gttccgagcggtgtgcgttcgcaccacaaggcaaagcgtttcatacgcggaaaccagaag
cgtccatcaagcgtatcgcgcggtgggcgaagaggcagaggatga
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