Phyllobacterium zundukense: BLM14_10310
Help
Entry
BLM14_10310 CDS
T05167
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pht
Phyllobacterium zundukense
Pathway
pht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BLM14_10310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pht03019
]
BLM14_10310
Messenger RNA biogenesis [BR:
pht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BLM14_10310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ATU91978
UniProt:
A0A2N9W484
LinkDB
All DBs
Position
complement(2078054..2079727)
Genome browser
AA seq
557 aa
AA seq
DB search
MANSDQAELVFLPLGGVGEIGMNLAMYGYGPAHKREWVVVDMGVSFAGPDLPGADLVLPD
IRFLQAERNNLKGIVITHAHEDHYGALLDLWPMLNVPVYATPFTAGLLEAKRQSEPGAPN
IPVTIYRASETFNVGPFEFEALAVTHSIPEPVSLAIKTPLGTVIHTGDWKMDPEPSLGPL
INEARFRALGDEGVLALMCDSTNALRDGESPSEREVGESLREIIEKARGRVAITTFSSNV
GRIRSIALAARDAGRQVLVLGRSMKRMIDVASELGYLDGVPEFLAEDDYGFIPRENMVII
LTGSQGEPRAALAKLARDEMRSVALSAGDTVIYSSRPIPGNEKAIIDTKNLLIEQGVHVI
SDGDQLVHVSGHPRRNELKRMYAWVRPRILVPVHGEAAHLVGQGSLAAMAGIPEVPQVRN
GDVLRLAPGRAEIIDQAPFGRLYKDGKLIGDEEEVGIVDRRKLSYVGHVAVSMLLDERYN
ILEDPEIVPIGLPENDDEGELLEDLLYDAAVGAVQSIPREKRKDIAMVREAVRRAVRAAT
NEVWGKKPIVTVFVTRP
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattccgatcaagcggaacttgttttccttcccttgggtggtgtcggtgagatc
gggatgaacctggccatgtacggctatggtcccgcgcacaagcgtgagtgggtcgtggtt
gacatgggcgtgagtttcgccggtcctgaccttccgggtgccgatctcgtgctgcccgat
attcgcttcctgcaggccgagcgcaataatctgaagggcattgtgatcacgcatgctcat
gaagatcattatggcgccttgcttgatctgtggccgatgctgaatgttcccgtctatgcg
acacccttcacggccggcttgctcgaagcaaagcgccagtcggaaccgggcgccccaaac
attccggtgaccatctaccgcgccagtgaaaccttcaatgttggtccgttcgaattcgag
gcgctcgctgttacgcactcgatcccggagcctgtttcgctggcgatcaagacgccgctc
ggcacggtcattcacaccggcgactggaagatggatcccgagccgtcgctggggccactc
atcaatgaagcgcgtttccgcgcacttggtgacgaaggcgtgctcgccttgatgtgcgat
tcgaccaatgccctgcgcgatggcgaatccccgtccgaacgggaagtcggcgagagcctg
cgcgagatcatcgaaaaggcccgcggccgcgtggctatcaccaccttctcgtccaatgtc
gggcgtatccggtccatcgccttggcggctcgcgacgcaggtcgccaggttctggtactt
ggccgctcgatgaagcgcatgatcgatgtggcaagtgagctcggttatcttgatggcgtt
ccggaattccttgccgaggacgattatggcttcattcctcgcgagaatatggtcatcatt
ctgaccggcagccagggtgaaccgcgcgccgcattggcaaaactggcccgagacgaaatg
cgcagtgttgcactgtctgctggcgacacggtgatctattcctcgcgtcctatcccgggt
aatgaaaaggcaattatcgatacgaagaacctcctgatcgaacagggcgttcacgtcatt
tccgacggcgatcaattggtgcacgtttcgggccatcctcggcgcaacgaattgaagcgc
atgtatgcatgggtgcgtccgcgcatccttgtaccggtccatggtgaggcggcgcatctc
gtagggcagggatctcttgccgcaatggccgggattccggaagtgccgcaggtgcgcaac
ggcgacgtgctgcggttggcaccgggcagagctgaaatcatcgatcaggctccattcgga
cgtttgtacaaggatggaaagctcatcggcgacgaggaagaggtcggcatcgttgaccgg
cgcaaactttcatatgtcggacatgttgccgtctcgatgctgctcgacgagagatacaat
atccttgaggatccggagatcgtcccgattggccttcccgaaaacgacgatgagggggag
cttctcgaagatttgctctatgacgcggcggttggtgcagtacaaagcattccacgtgaa
aaacgcaaggatatagccatggtccgtgaggccgtgcgccgggcggtacgcgctgcgacc
aatgaagtttggggcaaaaagccgatcgtcacagtctttgtgaccaggccctga
DBGET
integrated database retrieval system
