Pediculus humanus corporis (human body louse): Phum_PHUM005980
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Entry
Phum_PHUM005980 CDS
T01223
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
phu
Pediculus humanus corporis (human body louse)
Pathway
phu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Phum_PHUM005980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phu03021
]
Phum_PHUM005980
03019 Messenger RNA biogenesis [BR:
phu03019
]
Phum_PHUM005980
Transcription machinery [BR:
phu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
Phum_PHUM005980
Messenger RNA biogenesis [BR:
phu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
Phum_PHUM005980
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pfc11_Clp1_ID
Pcf11_helical
Pcf11_C
zf_PCFS4
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
8233503
NCBI-ProteinID:
XP_002422685
UniProt:
E0V991
LinkDB
All DBs
AA seq
1792 aa
AA seq
DB search
MSKEVAEEYLSSLADLTVNSKPLINMLTMLADENVDHAPAIVQVIENHLEKVPPEVKLPI
LYLIDSIIKNVSKVYVPLFTQNIVNVFVSVFEKVDERTRLNMYKLRQTWADVFPARKLYV
LDLRVKDIDHAWPVTAPTPTSIHFNPKFLTVLREQLLKKQQILIELQQKKLELQLMQTKA
IIEGQENPIGDSNNSSHTMLNNLIRPPLNEEAAKLFSQRAALKPKAVVMPPSASSTKFLI
KAAKSRDPRIAKQQQQQSKVSSEVTDKEQEIYNRQLAMLKTPVVEQVSPVVPAQKVLSDS
NVTKSHITFNVQNNSDKSRIDSKNKKGREGSVRNSENSKNKSKTVSAKEFKNKSKTSSTK
EFKSSPSKSSKSSSSKTSKTTMKDSQRQRSLLDTSKISSKNECNSDYKKSDGKSNKSKVK
LREKTNKSLPENVQQSGKLVSLDLELIESSPSPEPPPPPIISGPQDSSHNERKEELDFDE
VSDEEKERKNEITGFKDIKGVSKGRNYVRRNREQYSSSPPSKEVTGDVDFRNGGPAEKQP
RLLFDEEKSNIIEILVTESLVNVSGKDVDLRLLTMRGGSPSKKRLSTETPTEEPPKKKNK
SEIFDELFGSEDVDLRKITGGTINSGDRLPSPPPPPVISNGPIVPQVATIAPLIVGENNK
PLLGDGNSSEFSRENQMAEGTIRDAFDITRGRYRRNWTDLKIKPEAEIKPLTLSAQLELE
LESRKDHQFSSFDSLEKGGKKHFKERTSRGELDRLGRPLLYNKLPNDPRARRESLGVLDG
RDTDLRRLESLMDRDYDTNINVNMIIAQAADQVRNGTMSLQEYNELLKQVIQVNEKQKLR
EAQNKSRQEIRRTQHHHRNNRRSPNRFGSQNRNSPPIRQEEERRGERRPFNDIDERLQMP
WRNMQHNDSAPVKSGFGRLPYQCGPNRAPFDISENEDRQIKSEVWDEDSKGFRKGDDFEN
SENRLRDVMCNERTHDCVDVPPADSKVLELISNDPMKSINIDGTARDIRFYGDTAIVMLS
WDDPKEISFENGIRRVAIGDLSIVCALNDSYIMFMLNGNPHRLGAPTRELYIDGEFYEAH
FGGPPVQINIDGLPYLVQLEGPPPQVKIGKKRTDLICGRINMIVDATAMLPLFLDAKPQR
FDLRSRPYIFRLVNNLKTLLVNEVPVDIQFGGGCRQICGYGNLHFLRFVPFPLHLSLCRV
KIVNMENSGVPSLSNVASGKNSPSANTTQTSDSTTSNSNVDSVPQSTPRSTGAPLDILTS
LMSGTSAPEQSVGFSYQVESKDVQQPVQSSTPRPETETATTTQSQPSTIPLLGSGININD
LFQRLVATGIVPTLSSSLNSSQKSQNEVQAKPIDFSDTNSLRERQPPVINSLYSGIQCSS
CGVRFSPEETVKYSRHLDWHFRQNRREKDAARKGQSRKWYYDVSDWIQFEEIEDLEERAQ
SWFEAEASSNGDENNEQEELKSVPAPSGQGTTLCDLCRDEFETYYNEEKEEWHLKPCIVV
GEKYFHPLCYEDLSNVNSLIAEKTIDVNSIVTKEEEESFEEKITSSEKSETETEDKNDES
NVDNVTIAPAIDSEEYVEFNENIQETENEENDVEVVKTLLNELINCIVFKNEMNLSDETM
SNNDQEEEIEVLESVSVESKKNIIDVDLIEKLDDEEDDIVYQRKTPSPVVLIPPSKIKQE
PVDEMESPVAVVDQTVTNVVASIDGNVEMIDAPQVTPSAPSRIKITFNKPITVENTEKQN
VKEAQDVTSPPEEADPDPLPLKPKKPRIAEREMTVYLPCVRGTEVSGLCSIM
NT seq
5379 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagaagtggctgaggaatatctttcgtcattagctgatctaacggtgaacagc
aaacctttgattaacatgttgacaatgttagctgatgaaaatgtggatcatgctccagcc
attgtccaagtgattgagaatcatcttgaaaaggtaccacctgaagttaaactccctatt
ctatacttgatagattcaattatcaagaatgtatcaaaagtttatgtgcctctcttcact
caaaatatcgtcaatgttttcgtatctgtttttgaaaaggttgatgaaagaacaagactt
aatatgtataaattaagacaaacatgggccgatgtgtttccagcgaggaaactttacgta
ctggatcttcgagtaaaagatattgatcatgcttggccagttactgcacctacccctacg
agcatacattttaatccaaaatttttaacagttttgagagagcaacttcttaaaaagcag
caaattttaattgagcttcaacagaaaaaacttgaattgcaattaatgcaaacaaaagca
ataattgaaggtcaagaaaatccaatcggagattccaataatagtagtcatactatgctt
aataatttaatacggccgcctttgaatgaagaagctgcaaaattgttttctcaaagagct
gcattaaaaccaaaagctgttgttatgcctccttctgcctcgtcgactaaattccttata
aaagcagccaaatctagggatcctcgtatagccaaacaacaacaacaacaaagcaaagtt
tcgtcggaagtaaccgataaggagcaagaaatatataataggcaattagccatgttaaaa
actcccgtcgtagagcaagtgtcgccggtcgttcctgctcagaaagtattaagtgactcc
aatgtcacaaaaagtcatataacatttaatgtacaaaataattcggataaaagcagaata
gattcgaaaaataagaagggtagagaaggctctgttagaaattcggaaaattccaaaaac
aaatccaaaacggtgtctgccaaagaattcaaaaacaagtctaaaacatcgtccaccaaa
gaatttaaaagctcgccgagcaagagttcgaaaagctcgtcttctaaaacatcaaaaacg
acaatgaaagattctcaacgtcaaagatcattattggacacgtcgaaaatttcatccaaa
aacgaatgtaatagtgattataagaaatcggatggtaaatcaaataagagtaaagtgaaa
cttcgcgaaaagacaaataaaagtttaccggaaaatgttcaacaatctggtaaattagtg
tcgttagatttagaactgattgaatctagtccctcgccggagcctccacctccgcccatt
ataagcggaccacaagactcgtctcacaatgaaagaaaagaagaattggattttgacgaa
gtcagcgatgaagagaaagagagaaaaaacgaaataactggttttaaagatataaaaggg
gtttcaaagggaagaaattacgtaaggagaaatcgggagcaatattcaagttctcctcct
tcgaaagaagtgacgggtgacgtagattttcgtaatggcggacctgccgaaaaacagcct
cggctgttatttgacgaagagaaatccaacataattgaaatcttggttacagaaagttta
gtgaatgtatcgggaaaggatgtggatttaaggcttttaacaatgaggggtggaagtcca
agcaagaagagactgtcaactgaaactccaaccgaagaaccccctaaaaagaagaataaa
tctgaaattttcgatgaattatttggaagtgaagatgtggatcttcgtaaaataaccgga
ggaaccattaattctggagaccgattgccttccccacctccacctccagttatatctaac
ggaccgatagtacctcaagtagccaccatagcacctttaatcgtcggtgaaaataacaaa
cctttacttggagatggtaacagcagtgaattttcaagagaaaatcaaatggcagagggt
actatcagagacgcttttgatataactcgtggtagatacagaaggaattggacagattta
aaaatcaaacctgaagccgaaataaaacctttaacattatcagctcaattggaattagaa
ttagaatcgagaaaggatcatcaattttcatcttttgattctcttgaaaaaggtggtaaa
aagcactttaaagaaagaacttctcgcggggaattggatagattgggaaggccactatta
tataacaagcttcctaacgatcctagagctagaagggaatcattgggtgttttagatggt
cgcgataccgatttaagaaggttggaaagtttaatggatagagattatgatactaatatt
aatgtaaatatgatcattgctcaggcagcagatcaggttcgaaatggaaccatgtcttta
caagaatataatgaacttttaaagcaggtgattcaggtaaatgaaaagcaaaaattacga
gaagctcaaaataaatcacgtcaagagatacgaagaacacaacatcatcatagaaataat
cgccggtctccgaatcgtttcgggtctcaaaatagaaatagtcctccaattagacaagaa
gaagaaagacgaggagaaaggcgtccttttaatgatattgatgaaaggttacaaatgcct
tggcgtaacatgcagcacaacgattcagcacctgtaaaatccgggttcggtcgattgcct
tatcagtgcggacccaacagggctccatttgatatttctgaaaatgaagatcgacaaatt
aagtcggaagtttgggatgaagattcaaaaggatttagaaaaggggatgattttgaaaat
tcagaaaacaggctgcgtgacgtcatgtgtaacgaaagaacgcatgattgcgtggatgtt
cctcccgcggattccaaggttctcgaacttatttcaaacgatccaatgaaaagtattaat
attgatggcacggcacgagatattcgattttacggtgatactgccattgtaatgctttcg
tgggatgatccaaaggaaattagttttgaaaatggaataagaagagttgcgataggagac
ttaagtattgtttgtgctttaaacgattcatatataatgttcatgttgaatggaaatccc
cacaggcttggagcgcccacgcgagaattgtacatagacggagaattttacgaagctcat
tttggaggaccaccggttcaaattaacatagacggattaccttatttagttcaattggag
ggaccccctcctcaagttaaaatcggtaaaaaaagaactgacttaatttgcggtagaata
aatatgatagtcgatgccacagctatgttacccttatttctcgatgccaagcctcagagg
ttcgatctcagatctagaccctatatatttagattagttaataatttaaaaaccttactt
gttaatgaagttcctgttgatatccagtttggtggaggttgtcggcaaatatgtggttat
ggaaatttacactttttaaggtttgtgccttttcctcttcacctttcactgtgtcgtgta
aaaattgtcaacatggaaaattcgggagtgccgtcgttaagcaacgttgccagcggtaaa
aattctccttcggccaatacaactcaaacgtcggacagcacaacatctaattcgaatgtc
gattctgtacctcaatcaacgccccggtctactggtgctcccttagacattttaacgagt
ttaatgagtggaacatcagcaccagaacaatcagtcggatttagttatcaagttgaaagt
aaagatgttcaacaaccggtacaatcatcaacaccacgaccagaaacagaaacggctaca
acaacgcaatctcaaccgtcaaccattcctcttttgggaagtggtatcaacattaatgat
ttattccaacgattggttgccaccggtattgtgccaacgttatccagttcgttgaatagc
agtcaaaaatcacaaaatgaagtacaagcaaaaccgattgattttagtgatacaaattct
ttgagagaaaggcaacccccagtcatcaattcattatattcaggaatacaatgtagttcg
tgcggtgtgcgattctcccccgaagaaaccgtaaaatattcaagacatttggattggcat
ttcaggcaaaatcgtcgagaaaaagatgcagcgagaaaaggtcaatctcgtaaatggtac
tacgatgtttccgattggatacaatttgaggaaattgaagatttagaagaaagggctcaa
agttggttcgaagcagaagcatcttccaacggcgatgaaaataacgaacaagaagaatta
aaaagtgttcccgcgccatcgggacaaggtaccactttatgcgatttatgtcgggatgaa
ttcgaaacttactacaacgaagaaaaagaagaatggcatttaaaaccgtgcatcgttgtg
ggagaaaaatattttcatcccctttgttacgaagacttgagcaatgtgaattcgttaatt
gccgaaaaaacaattgatgtaaattcgattgttacgaaagaagaagaagaatcgtttgaa
gaaaaaataacaagttcggaaaaaagcgaaacggaaacggaagacaaaaatgacgaatca
aatgttgacaatgtaacaattgcacccgcaatagactcggaggaatatgtcgaattcaat
gaaaatattcaggaaacggaaaacgaagagaacgatgtcgaagtcgttaaaactctttta
aacgaacttatcaattgcatcgtgtttaaaaacgaaatgaatttgtctgatgaaacaatg
agtaacaatgatcaggaagaagagatcgaagtgttagaaagcgtttccgtcgaatcgaaa
aaaaatattattgacgtggatttgatagagaaattggacgacgaagaggatgacattgtg
taccagcggaaaacgccatcgcccgtagttttaatacctccctcgaaaataaaacaagag
cccgtcgacgaaatggaatcacccgtggcagtagtcgatcaaacggttaccaacgtcgtt
gcgtccatcgatggaaacgttgaaatgatagatgcgccacaggtaacgccatcggctccg
agcagaataaaaataacatttaacaaaccgataacggttgaaaatacggaaaaacaaaac
gtgaaagaagctcaagacgtgacgtcaccaccggaagaagcagatcccgatccgttaccg
ctcaaaccgaaaaaaccgagaatcgcggaaagggaaatgaccgtttatctaccgtgcgtg
agaggaaccgaagtttctggattgtgttcgattatgtaa
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integrated database retrieval system
