Pediculus humanus corporis (human body louse): Phum_PHUM420000
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Entry
Phum_PHUM420000 CDS
T01223
Name
(RefSeq) Helicase, putative
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
phu
Pediculus humanus corporis (human body louse)
Pathway
phu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Phum_PHUM420000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phu03019
]
Phum_PHUM420000
Enzymes [BR:
phu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Phum_PHUM420000
Messenger RNA biogenesis [BR:
phu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
Phum_PHUM420000
mRNA degradation factors
3'-5' decay
Ski complex
Phum_PHUM420000
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
DEXQc_Suv3
Ski2_N
Ski2_beta-barrel
Motif
Other DBs
NCBI-GeneID:
8234469
NCBI-ProteinID:
XP_002429090
UniProt:
E0VSJ6
LinkDB
All DBs
AA seq
1184 aa
AA seq
DB search
MDLVVDLPFGVPPILPDVGKQLQEYILCPDKLPIHNFETSQQHWDEEPDTSALYLSDLSE
NSTILKLDRDLRSGELRSFTEVLCNGDSLPTINKEEQSKTIDDIIEVLENVGDVIETEEN
EKSVKQNETSDSNFINLVDLLKGGQHLLEVTNSSFELENEEDKHENKNDTEEISVEESDV
ISSIPNEVAFKAPVIRLSDVTPLKGVTSTEWAEVIDVSLPVTDFYEKIPDMAFKYNFELD
TFQKQAILKLEEHCSVLVAAHTSAGKTVIAEYAIALSQRHMTRTIYTSPIKALSNQKYRD
FRNTFKDVGLITGDFQVNQTGTCLIMTTEILKSMLLAQNDIIRDLEYVIFDEVHYINDFK
RGHVWEEVVILLPSHVSIVMLSATVPNTLQFADWVGRTKQQKMYVISTTQRPVPLEHFLY
TGSGGNSKDERFLILSATNEFQKKGYLEAVEAKKKRESKQKNVVKERPQTGRKQDTTMWV
ALIEHLQKHDKLPIVAFILSQKRCDENASSLMSVDLTTAKEKSHVRHFFQQSIQKLKEPD
QTLPQILKMQKLLENGIGIHHKGILPILKEIVEMLFQERCVKILFATETFAMGVNMPAKT
VVFDSIHKYDGSEKRMLLPSEYIQMAGRAGRRGLDKTGTVIIICREDMPTENNLIQLMKG
IPKKIESQFRLTYSVILKLERKKIVAEGRVTVEEMMANSFKEADHIIKKKTYTQSLEQVE
NNLSSLEKTIEKNNVWEEVRDSCSILLDYIKNWAVLSSKIFTDKKGLKLVTPGRVVLLTH
KSHINKLGIILSCEYKKNVKFKVLVLDNKIDKSKDNSETDKDFKSIENEWYKLIGLLNLN
KIFVPDDLGVHTVITIDASDIFEVTTILLKIDSKIILSDWDNRQIPRFRDNPPGQTFQRV
LEELTEITHTYANSEEKIEYLNLLKDFKISSKEDFKNFHELVKLKTKVCESNTLTDHEQL
KKFFKLLCLEKKKENLKFLLSYQSMSLYSDYKSRLAVLKMLNYLDSKNSVQMKGNVACEM
SSQELLITELVFRNALNDLQPPEIAALLSCFVYQGKKKNEPLQLTATLEAGIARIKKIAK
DVFEAEEICGVNQAEATGNEENMNFDLVPVVYEWAREKPFAQIMTLTDVQEGIIVRCIQQ
LNETIKEVKNAAKIIGEPTLQQKMEDASNAIKRDIVFAASLYMQ
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggatttagtagttgatttaccttttggagttcctccaatattacccgatgttggaaaa
cagttacaagaatatattttatgtcctgataaattacccattcacaattttgaaacatct
cagcaacattgggatgaagaacctgatacctctgctctgtacttaagtgatttatctgaa
aatagcactattttaaaacttgaccgagatttaagaagcggtgaattaagatcttttaca
gaagttctctgtaatggagattctttacctacgataaataaagaagaacaatccaaaact
atagatgatattatagaagttttagaaaatgttggtgacgttatagaaactgaagaaaat
gaaaagtcagttaaacaaaatgaaacaagtgattctaacttcattaatttagtcgactta
ttaaagggtggtcaacatttattagaagtaaccaatagttcttttgaacttgaaaacgaa
gaagataaacatgaaaataaaaatgatacggaagaaatatcagttgaagaatcagatgtg
ataagcagtattccaaatgaagtagcattcaaagctccagttataagattgtcagatgtt
accccattaaaaggggtaacttctacagaatgggcagaggtaattgatgttagcctacct
gtcacagatttttatgaaaaaatcccagatatggcctttaaatacaatttcgaacttgat
acatttcagaaacaggctatcttaaaattagaagagcattgtagtgttttggtagctgct
catacttcagctggtaaaacagtcattgcagaatatgccattgcattatctcagcgtcat
atgacccgtaccatttacacttccccaattaaggctttatcaaatcaaaaatatagagat
tttagaaatacttttaaagatgtaggactcattacaggagattttcaagtaaatcagaca
ggaacatgtcttataatgactacagaaattttaaaatccatgttattagcacaaaatgat
atcattagagatttggaatatgtaatttttgatgaagtacattacataaatgattttaaa
agaggacatgtgtgggaggaagttgtcattttacttccgtcgcatgtgagcattgtaatg
cttagtgcaacagttccaaacactttgcaatttgccgattgggtaggaagaactaaacaa
caaaaaatgtatgttattagtactactcaaaggcctgttcctttagaacattttctatac
actggatctggaggaaatagtaaagatgaaagatttttaattttatcagctacaaatgaa
tttcaaaaaaaaggatatttagaagctgttgaagccaaaaaaaaaagagaaagtaaacaa
aaaaatgttgtaaaagaaagaccacaaacaggaagaaaacaagacacaactatgtgggta
gcattaatagaacacttacaaaaacatgataagttgcctatagtggcatttattctttct
caaaagagatgtgatgaaaatgctagtagcttaatgtcagtggatttaactacagccaaa
gaaaaatcacatgtacgacatttttttcaacagagtattcaaaaattgaaggagcctgat
caaactttgcctcaaatactcaaaatgcaaaaactacttgaaaatggaattggaattcac
cacaaaggcatattacctattctaaaagaaatagttgaaatgctttttcaagaacgatgc
gtaaaaattctgtttgctactgaaacatttgcaatgggagtaaatatgccagctaaaacg
gttgttttcgattcgatacataaatacgacggatctgaaaaaagaatgcttttgccatcc
gaatatattcaaatggctggaagagcaggcagaagagggctcgataaaacaggaaccgtt
attataatttgtagagaggacatgccaactgaaaataatttaatacaattaatgaaaggt
ataccaaaaaaaattgaatcacaatttcgtttaacctattctgtaattttaaaacttgag
aggaaaaaaatcgtggcagaaggaagagtaaccgtggaagaaatgatggcaaacagtttt
aaagaagccgatcatataataaaaaagaaaacgtacacgcaatctttggaacaagtagaa
aataatttatcaagtttagaaaaaacaattgaaaagaataatgtatgggaagaagtccga
gacagttgttccatactcttagactatataaaaaattgggcagttttgagttcaaaaatt
tttaccgataagaaaggattaaaacttgtaactcccggtcgtgttgttttacttactcat
aaatctcacataaataaattaggaattatattgtcttgcgaatataaaaaaaatgttaaa
tttaaagttttagtactggataataaaattgacaaatcaaaagacaactcagagactgat
aaagactttaaatcaattgagaatgaatggtataaactaattggcttattaaatttaaat
aaaatatttgtacccgacgatttgggcgttcatactgtcataactattgacgcttcggat
attttcgaagtaacaactattctattgaaaatagactctaaaataattttatcagattgg
gataataggcaaatccctagatttcgagataatccacctgggcaaacatttcaaagagtt
ttggaagaattaacggaaataactcacacttatgctaattcggaagagaaaattgaatat
ttaaatttattaaaagattttaaaataagtagcaaagaagattttaaaaatttccacgag
ttggtcaaattaaaaacaaaagtttgcgaaagtaatactttaactgatcatgagcaattg
aaaaaatttttcaaacttttatgtttggaaaaaaagaaagaaaatttaaaatttttgctg
tcgtatcaaagtatgtctttgtattccgattacaaaagcagattagccgttttaaaaatg
ttgaattatcttgacagtaaaaattcagttcaaatgaaagggaatgttgcttgcgaaatg
agcagtcaagaacttctcattacagaattagtatttagaaatgctttgaacgatttgcaa
ccaccggaaatagcggcattattatcttgtttcgtttatcaagggaaaaaaaaaaatgaa
ccacttcaactaacggctaccctagaagcaggaattgcaagaataaaaaaaatagccaaa
gatgtttttgaagcagaagagatatgtggtgtaaatcaggcagaagcaacgggaaatgaa
gaaaacatgaatttcgatttagttccagtagtttatgaatgggctagagaaaagcctttt
gcacaaattatgacattaactgatgtccaagaaggtattatagttcgttgtatacaacag
ttaaatgaaacaatcaaagaagtgaaaaatgcagcgaaaattattggagaacccacatta
caacaaaaaatggaagatgcatccaatgcaataaaaagagacattgtttttgcagctagc
ctttacatgcagtaa
DBGET
integrated database retrieval system
